View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4479-Insertion-1 (Length: 846)
Name: NF4479-Insertion-1
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 47 - 843
Target Start/End: Complemental strand, 26833582 - 26832772
Alignment:
| Q |
47 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833582 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26833483 |
T |
|
| Q |
147 |
tcactcatttatggaaaattgagtcgttg---cgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
243 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833482 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26833383 |
T |
|
| Q |
244 |
ttaaaagtacnnnnnnnnn-------------caatttgaactaacattgaagtgaagtcgaacggttttatgtctatcttctggcccttatttcttcat |
330 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |
|
|
| T |
26833382 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26833283 |
T |
|
| Q |
331 |
cttcaaataattcatttaagatcatgtgaattaaatataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
26833282 |
cttcaaataattcatttaagatcatgtgaattaaata--actttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26833185 |
T |
|
| Q |
430 |
tacattttagaagtcatatatgatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
529 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833184 |
tacattttagaagtcatatataatcaatcccaccattataacacaaaaaa-gaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26833086 |
T |
|
| Q |
530 |
aaagctactaatgaaacctaaaaac--ggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
627 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833085 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
26832986 |
T |
|
| Q |
628 |
cagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtggattgttggcttct |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26832985 |
cagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagt-gattgttggcttct |
26832887 |
T |
|
| Q |
728 |
tattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaa |
827 |
Q |
| |
|
| ||||| | ||| || | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832886 |
tgttgtaacgagcaagtc-tggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaa |
26832788 |
T |
|
| Q |
828 |
tatctgggtgaacttg |
843 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
26832787 |
tgtctgggtgaacttg |
26832772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 47 - 843
Target Start/End: Complemental strand, 26434871 - 26434061
Alignment:
| Q |
47 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434871 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26434772 |
T |
|
| Q |
147 |
tcactcatttatggaaaattgagtcgttg---cgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
243 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434771 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26434672 |
T |
|
| Q |
244 |
ttaaaagtacnnnnnnnnn-------------caatttgaactaacattgaagtgaagtcgaacggttttatgtctatcttctggcccttatttcttcat |
330 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |
|
|
| T |
26434671 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26434572 |
T |
|
| Q |
331 |
cttcaaataattcatttaagatcatgtgaattaaatataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
26434571 |
cttcaaataattcatttaagatcatgtgaattaaata--actttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26434474 |
T |
|
| Q |
430 |
tacattttagaagtcatatatgatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
529 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434473 |
tacattttagaagtcatatataatcaatcccaccattataacacaaaaaa-gaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26434375 |
T |
|
| Q |
530 |
aaagctactaatgaaacctaaaaac--ggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
627 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434374 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
26434275 |
T |
|
| Q |
628 |
cagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtggattgttggcttct |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26434274 |
cagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagt-gattgttggcttct |
26434176 |
T |
|
| Q |
728 |
tattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaa |
827 |
Q |
| |
|
| ||||| | ||| || | |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434175 |
tgttgtaacgagcaagtc-tggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaa |
26434077 |
T |
|
| Q |
828 |
tatctgggtgaacttg |
843 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
26434076 |
tgtctggatgaacttg |
26434061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 599 - 843
Target Start/End: Complemental strand, 26436083 - 26435841
Alignment:
| Q |
599 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
698 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26436083 |
tcaaatctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
26435984 |
T |
|
| Q |
699 |
atttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcat |
798 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | ||| || | |||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435983 |
atttcccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcat |
26435886 |
T |
|
| Q |
799 |
gatacccatggctttgcttgagataccaatatctgggtgaacttg |
843 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26435885 |
gatacccatggctttgcttgagataccaatgtctgggtgaacttg |
26435841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 599 - 843
Target Start/End: Complemental strand, 24307502 - 24307260
Alignment:
| Q |
599 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
698 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || |||||| |
|
|
| T |
24307502 |
tcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctga |
24307403 |
T |
|
| Q |
699 |
atttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcat |
798 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307402 |
atttcccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcat |
24307305 |
T |
|
| Q |
799 |
gatacccatggctttgcttgagataccaatatctgggtgaacttg |
843 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24307304 |
tattcccatggctttgcttgagataccaatgtctgggtgaacttg |
24307260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 597 - 840
Target Start/End: Original strand, 23415706 - 23415947
Alignment:
| Q |
597 |
tttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtct |
696 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || |||| |
|
|
| T |
23415706 |
tttcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtct |
23415805 |
T |
|
| Q |
697 |
gaatttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttc |
796 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
23415806 |
gaatttcccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttc |
23415903 |
T |
|
| Q |
797 |
atgatacccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23415904 |
atgatacccatggccttgcttgagataccaatgtctgggtgaac |
23415947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 604 - 843
Target Start/End: Original strand, 23408544 - 23408781
Alignment:
| Q |
604 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc |
703 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||| |
|
|
| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc |
23408643 |
T |
|
| Q |
704 |
ccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatac |
803 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408644 |
ccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatac |
23408741 |
T |
|
| Q |
804 |
ccatggctttgcttgagataccaatatctgggtgaacttg |
843 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
23408742 |
ccatcgctttgcttgagataccaatgtctgggtgaacttg |
23408781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 600 - 840
Target Start/End: Complemental strand, 23886105 - 23885867
Alignment:
| Q |
600 |
caaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaa |
699 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
23886105 |
caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaa |
23886006 |
T |
|
| Q |
700 |
tttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatg |
799 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
23886005 |
tttcccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatg |
23885908 |
T |
|
| Q |
800 |
atacccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23885907 |
atacccatggccttgcttgagataccaatgtctgggtgaac |
23885867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 603 - 840
Target Start/End: Original strand, 23453375 - 23453610
Alignment:
| Q |
603 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
702 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
23453375 |
atctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaattt |
23453474 |
T |
|
| Q |
703 |
cccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgata |
802 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453475 |
cccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgata |
23453572 |
T |
|
| Q |
803 |
cccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23453573 |
cccatggccttgcttgagataccaatgtctgggtgaac |
23453610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 601 - 840
Target Start/End: Complemental strand, 23402351 - 23402114
Alignment:
| Q |
601 |
aaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaat |
700 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
23402351 |
aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaat |
23402252 |
T |
|
| Q |
701 |
ttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatga |
800 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| | ||| || | |||| ||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
23402251 |
ttcccttgaagt-gattgttggcttcttgttgtaacgagcaagtc-tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatga |
23402154 |
T |
|
| Q |
801 |
tacccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23402153 |
tacccatggccttgcttgagataccaatgtctgggtgaac |
23402114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 603 - 840
Target Start/End: Complemental strand, 23869007 - 23868772
Alignment:
| Q |
603 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
702 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || || |||||||||||||| |||||||||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
23869007 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaattt |
23868908 |
T |
|
| Q |
703 |
cccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgata |
802 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||| || || ||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23868907 |
cccttgaagtg-attgttggcttcttgttgtaacgagcaagtct-ggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattatt |
23868810 |
T |
|
| Q |
803 |
cccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23868809 |
cccatggctttgcttgagataccaatgtctgggtgaac |
23868772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 603 - 843
Target Start/End: Original strand, 34662044 - 34662282
Alignment:
| Q |
603 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
702 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || || |||||||||| |
|
|
| T |
34662044 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
34662143 |
T |
|
| Q |
703 |
cccttgaagtggattgttggcttcttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgata |
802 |
Q |
| |
|
|||| ||||| || || |||||||| || ||||| || || || ||||||||| ||||| || |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34662144 |
ccctcgaagtt-atcgtcggcttcttgttataccttgcaagtct-ggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataata |
34662241 |
T |
|
| Q |
803 |
cccatggctttgcttgagataccaatatctgggtgaacttg |
843 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
34662242 |
cccatggctttgcttgagataccaatgtcagggtgaacttg |
34662282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 656 - 790
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
656 |
cttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtggattgttggcttcttattgtacctagcgagccttggaagatt |
755 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| | ||| || | |||| ||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagt-gattgttggcttcttgttgtagcgagcaagtc-tggagtatt |
23451885 |
T |
|
| Q |
756 |
cctgagctagtttctcgaagatatcattgatgaaa |
790 |
Q |
| |
|
| ||||| || ||||| |||||||| ||||||||| |
|
|
| T |
23451886 |
cttgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26833692 - 26833653
Alignment:
| Q |
8 |
tttggaacataaaggacatttttaaagatggtggaaggat |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26833692 |
tttggaacataaaggacatttttaaagatggtggaaggat |
26833653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26434981 - 26434942
Alignment:
| Q |
8 |
tttggaacataaaggacatttttaaagatggtggaaggat |
47 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434981 |
tttgaaacataaaggacatttttaaagatggtggaaggat |
26434942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 681
Target Start/End: Complemental strand, 31632929 - 31632848
Alignment:
| Q |
600 |
caaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaa |
681 |
Q |
| |
|
||||||||||| || || || || || ||| | |||||||||||| ||||| ||||||| ||||||||| |||||| ||||| |
|
|
| T |
31632929 |
caaatctaagagcttgtgaatttggtcacaactttggtaccctcacaaacaacatgcttagccaattcatcgggcacaacaa |
31632848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 7e-36; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 627 - 828
Target Start/End: Complemental strand, 41670651 - 41670452
Alignment:
| Q |
627 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtggattgttggcttc |
726 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||| | || || ||||| || |||| |||||| ||||| |||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtg-attgtaggcttc |
41670553 |
T |
|
| Q |
727 |
ttattgtacctagcgagccttggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatacca |
826 |
Q |
| |
|
|| |||||||| || || || ||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
41670552 |
ttgttgtacctcgcaagtct-ggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagatacca |
41670454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 599 - 728
Target Start/End: Complemental strand, 33216724 - 33216596
Alignment:
| Q |
599 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
698 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| || || ||| |
|
|
| T |
33216724 |
tcaaatttaagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttga |
33216625 |
T |
|
| Q |
699 |
atttcccttgaagtggattgttggcttctt |
728 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |
|
|
| T |
33216624 |
attttccttgaagt-gattgttggcttctt |
33216596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 599 - 684
Target Start/End: Complemental strand, 45576482 - 45576397
Alignment:
| Q |
599 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcc |
684 |
Q |
| |
|
|||||||||||| || || || || || ||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
45576482 |
tcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaagcc |
45576397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 749 - 814
Target Start/End: Complemental strand, 29391597 - 29391532
Alignment:
| Q |
749 |
gaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttg |
814 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
29391597 |
gaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttg |
29391532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 747 - 828
Target Start/End: Complemental strand, 40795902 - 40795821
Alignment:
| Q |
747 |
tggaagattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
828 |
Q |
| |
|
|||| ||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
40795902 |
tggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaat |
40795821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 607 - 679
Target Start/End: Complemental strand, 29391737 - 29391665
Alignment:
| Q |
607 |
aagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaac |
679 |
Q |
| |
|
||||||| ||||| || || ||||||||||| || || ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
29391737 |
aagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaac |
29391665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 599 - 728
Target Start/End: Complemental strand, 47317561 - 47317433
Alignment:
| Q |
599 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctga |
698 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| |||||||||||||||||| |||| |||||||||||||| || |||| ||| ||||| | || ||| |
|
|
| T |
47317561 |
tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttga |
47317462 |
T |
|
| Q |
699 |
atttcccttgaagtggattgttggcttctt |
728 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
47317461 |
atttcccttgaagt-gattgttggcttctt |
47317433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 752 - 840
Target Start/End: Original strand, 40180420 - 40180508
Alignment:
| Q |
752 |
gattcctgagctagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatatctgggtgaac |
840 |
Q |
| |
|
||||||||||| |||||||| |||||||| || ||||||||||||||||| ||||| || |||||||| | ||| ||||| || ||||| |
|
|
| T |
40180420 |
gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaac |
40180508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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