View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4479-Insertion-2 (Length: 815)
Name: NF4479-Insertion-2
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-2 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 788; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 8 - 815
Target Start/End: Complemental strand, 5376274 - 5375467
Alignment:
| Q |
8 |
ctaatttgtaccacaactgatgtaccatgtaacacagtttgcctatacattaacagtatagaaaatatgggactaaaataaacaaaaaagataaaggatt |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5376274 |
ctaatttgtaccagaactgatgtaccatgtaacacagtttgcctatacattaacagtatagaaaatatgggactaaaataaacaaaaaagataaaggatt |
5376175 |
T |
|
| Q |
108 |
ttattctcaatcggaaaattaagataaatgaccaacccattagtgttttctaataattgaagaggagtgctagaaacactcactttgcaccacatgctgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5376174 |
ttattctcaatcggaaaattaagataaatgaccaacccattagtgttttctaataattgaagaggagtgctagaaacactcactttgcaccacatgctgc |
5376075 |
T |
|
| Q |
208 |
tcaacgagtcggcaaaactgcgaggagatggaacattttctttcctttttggtagtttgcacaaactcatctctagagataatagcttgcacaaattcaa |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5376074 |
tcaacgagtcggcaaaactgtgaggagatggaacattttctttcctttttggtagtttgcacaaactcagctctagagataatagcttgcacaaattcaa |
5375975 |
T |
|
| Q |
308 |
aggatcttcaatttatgcaatgcatctaaacaatagcgaatagttgtacaacaaaataaattttctcattaaatggaagctaatccaaattcaatataga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375974 |
aggatcttcaatttatgcaatgcatctaaacaatagcgaatagttgtacaacaaaataaattttctcattaaatggaagctaatccaaattcaatataga |
5375875 |
T |
|
| Q |
408 |
agtaccaaaaataggaactgcaataaaataattccctttgaaagtcgattacatcaaataaaataggaactacaatatagtagaatgaagaaaaataaat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5375874 |
agtaccaaaaataggaactgcaataaaataattccctttgaaagttgattacatcaaataaaataggaactacaatatagtagaatgaataaaaataaat |
5375775 |
T |
|
| Q |
508 |
aaattttaagcatgttatctagaaagtagaaaaatgtctccacacttaaaggattctcttgattccaatttattgacaaaacttttgcatataaaattcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375774 |
aaattttaagcatgttatctagaaagtagaaaaatgtctccacacttaaaggattctcttgattccaatttattgacaaaacttttgcatataaaattcc |
5375675 |
T |
|
| Q |
608 |
tctagcttttgctgtctccaccgtgccttttctgcaaaacccagcatctacaactttaacttctattcttgtgtgatcagtgatcttgtttcaactgaaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375674 |
tctagcttttgctgtctccaccgtgccttttctgcaaaacccagcatctacaactttaacttctattcttgtgtgatcagtgatcttgtttcaactgaaa |
5375575 |
T |
|
| Q |
708 |
aggtaacactattgagaacttgtattaaaatccacacaaattcaggttacaagccttatatgaactcaaacaattagataattttcattttactagacaa |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5375574 |
aggtaacactattgagaacttgtattaaaatccacacaaattcaggttacaagccttatatgaactcaaacaattagataattttcattttactagacaa |
5375475 |
T |
|
| Q |
808 |
gtacaaca |
815 |
Q |
| |
|
|||||||| |
|
|
| T |
5375474 |
gtacaaca |
5375467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 433 - 815
Target Start/End: Complemental strand, 5364043 - 5363663
Alignment:
| Q |
433 |
aaataattccctttgaaagtcgattacatcaaataaaataggaactacaatatagtagaatgaagaaaaataaataaattttaagcatgttatctagaaa |
532 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |||||| | |||||||||||||||| | |||||||||||| | |
|
|
| T |
5364043 |
aaataaatccccttgaaagtcgaatacatgaaataaaataggaactataatatagcagaatgcggtaaaataaataaattttta-catgttatctaggta |
5363945 |
T |
|
| Q |
533 |
gtagaaaaatgtctccacacttaaaggattctcttgattccaatttattgacaaaacttttgcatataaaattcctctagcttttgctgtctccaccgtg |
632 |
Q |
| |
|
|| |||| || ||| ||||||| ||||| | ||||||||||||| |||||||||||||| | | |||||||||| ||||| ||||| ||||||| ||| |
|
|
| T |
5363944 |
gtggaaagatttcttcacacttcaaggaatttcttgattccaatctattgacaaaacttctacgtataaaattcttctagattttgaa-tctccactgtg |
5363846 |
T |
|
| Q |
633 |
ccttttctgcaaaacccagcatctacaactttaacttctattcttgtgtgatcagtgatcttgtttcaactgaaaaggtaacactattgagaacttgtat |
732 |
Q |
| |
|
|| ||||||||||| ||| |||||| ||| ||| | |||||||| ||||||| | ||| ||||| ||| |||| ||| ||| ||||||||||||||| |
|
|
| T |
5363845 |
ccatttctgcaaaatccaacatctataacattatcatctattctactgtgatcttggttctagtttcgactcaaaaagtatcaccattgagaacttgtat |
5363746 |
T |
|
| Q |
733 |
taaaatccacacaaattcaggttacaagccttatatgaactcaaacaattagataattttcattttactagacaagtacaaca |
815 |
Q |
| |
|
||| |||| ||||||||||| |||| | | |||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
5363745 |
taacatccgcacaaattcagattactatcgttatatgaactcaaacaagtaggacattttcattttactagacaagtacaaca |
5363663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 5364673 - 5364580
Alignment:
| Q |
168 |
agaggagtgctagaaacactcactttgcaccacatgctgctcaacgagtcggcaaaactgcgaggagatggaacattttctttcctttttggtag |
262 |
Q |
| |
|
||||||||||||||||||||| | |||| ||| | ||||||||||| || || ||| | |||||||||||||||||||||| | ||||||||| |
|
|
| T |
5364673 |
agaggagtgctagaaacactcgcactgcaacacct-ctgctcaacgactcaacagaacagtgaggagatggaacattttctttaccttttggtag |
5364580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 8399550 - 8399603
Alignment:
| Q |
457 |
tacatcaaataaaataggaactacaatatagtagaatgaagaaaaataaataaa |
510 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||| || |||||||||||| |
|
|
| T |
8399550 |
tacatgaaataaaataggaactagaatatagcagaatgcaggaaaataaataaa |
8399603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 734
Target Start/End: Complemental strand, 5369840 - 5369801
Alignment:
| Q |
695 |
gtttcaactgaaaaggtaacactattgagaacttgtatta |
734 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5369840 |
gtttcaactgaaaaagtaacactattaagaacttgtatta |
5369801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 1267286 - 1267217
Alignment:
| Q |
223 |
aactgcgaggagatggaacattttctttcctttttggtagtttgca-caaactcatctctagagataata |
291 |
Q |
| |
|
||||| |||||||||||| |||||| |||| ||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
1267286 |
aactgtgaggagatggaatattttccttcccttttggtagcttgcaccaaactcagttctagagataata |
1267217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 815
Target Start/End: Original strand, 28926702 - 28926794
Alignment:
| Q |
723 |
gaacttgtattaaaatccacacaaattcaggttacaagccttatatgaactcaaacaattagataattttcattttactagacaagtacaaca |
815 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| |||||||| ||| ||||||| |||||| | | |||||||||||| |||||||||||||| |
|
|
| T |
28926702 |
gaacttggattaacttccccacaaattcagtttacaagcattagatgaactgaaacaagcaagtcattttcattttatcagacaagtacaaca |
28926794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University