View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4479-Insertion-3 (Length: 712)
Name: NF4479-Insertion-3
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-3 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 591; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 712
Target Start/End: Original strand, 2446880 - 2447580
Alignment:
| Q |
8 |
ataaatacaattaaaataggtaaccaaattagctaatatttacaatgaactggggtattttcatttgatttcttgcaaaacaagtaaataagtgcctnnn |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446880 |
ataaatacaattaaaataggtaaccaaattagctaatatttacaatgaactggggtattttcatttgatttcttgcaaaacaagtaaataagtgccttgt |
2446979 |
T |
|
| Q |
108 |
nnnnnnnnnnnnnnnnnaatttaagtaaaattgccacttatcaagactaattctacgatgcaaacatgtgtgacattttaattctataaatttgataaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2446980 |
gtgtgtgtgtgtg----aatttaagtaaaattgccacttatcaagactaattctacgatgcaaacatgtgtgacattttaattatataaatttgataaaa |
2447075 |
T |
|
| Q |
208 |
gtttattcaagacttcccttcacatatgtagagataccataaaataacaatagtatttgggtttgactttatcaactttatgatgcagaatgctgttatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2447076 |
gtttattcaagacttcccttcacatatgtagagacgccataaaataacaatagtatttgggtttgactttatcaactttatgatgcagaatgctgttatt |
2447175 |
T |
|
| Q |
308 |
gtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattttattactactttgtttttcacttctctttaatatatgtatat |
407 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2447176 |
gtgttatatttggcgtgtgcctctttttttctttgcttcctaggtgagctttcaattttattactactttgtttttcacttctctttaatatatgtatat |
2447275 |
T |
|
| Q |
408 |
gatacacaagtattaacattgtacctttttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2447276 |
gatacacaagtattaacattgtacctttttcagagggttattgttggacaagaacaggtgagagacaagctgcaagaatgagagttaggtacttaaaagc |
2447375 |
T |
|
| Q |
508 |
agttctaagacaagaagtagcatactttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2447376 |
agttctaagacaagaagtagcatactttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtc |
2447475 |
T |
|
| Q |
608 |
cttagtgaaaagttcttaaaaaatatcattctactttatgctatgtagcaccgacactacagatcgaagacatgtgtcagtgtctgacatgatcggtcat |
707 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2447476 |
cttagtgaaaaggtcttaaaaaatatcattctactttatgctatgtagcaccgacactacagatcgaagacatatgtcagtgtttgacatgatcggtcat |
2447575 |
T |
|
| Q |
708 |
acacc |
712 |
Q |
| |
|
||||| |
|
|
| T |
2447576 |
acacc |
2447580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 270 - 619
Target Start/End: Complemental strand, 2646850 - 2646494
Alignment:
| Q |
270 |
ttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattttatt |
369 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| || || ||||||||||||| ||||| || |||||||||||||||| |||||||||| || |
|
|
| T |
2646850 |
ttgactttgtcaactttgtgatgcagaatgctattgttttgttatatttggcatgtgcttcttttgttgcttgcttcctaggtgagttttcaattttgtt |
2646751 |
T |
|
| Q |
370 |
actac----tttgtttttcacttctctttaatatatgtatatgataca---caagtattaacattgtacctttttcagagggttattgttggacaagaac |
462 |
Q |
| |
|
| || |||| | |||||||||||| || | | ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2646750 |
attatatattttggtgttcacttctcttggatttgtatatatgatacatgacaagtattaacattgtacatttttcagagggttattgttggacaagaac |
2646651 |
T |
|
| Q |
463 |
aggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttgatttgcacggtacaagcatatcagaa |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
2646650 |
aggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtatcatactttgatttgcatattacaagcacatcagaa |
2646551 |
T |
|
| Q |
563 |
gtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag |
619 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||||||||| || |||||||||||| |
|
|
| T |
2646550 |
gtcatcaccagtgtctctaacgacagtctggtaattcaagacgttcttagtgaaaag |
2646494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 413 - 619
Target Start/End: Original strand, 2617716 - 2617922
Alignment:
| Q |
413 |
acaagtattaacattgtacctttttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttc |
512 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2617716 |
acaagtattaacattgtacatttttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttc |
2617815 |
T |
|
| Q |
513 |
taagacaagaagtagcatactttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttag |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||| | |||| |||| ||||||||||||| ||||| |
|
|
| T |
2617816 |
taagacaagaagtagcatactttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttag |
2617915 |
T |
|
| Q |
613 |
tgaaaag |
619 |
Q |
| |
|
||||||| |
|
|
| T |
2617916 |
tgaaaag |
2617922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 424 - 615
Target Start/End: Original strand, 2431216 - 2431407
Alignment:
| Q |
424 |
cattgtacctttttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaa |
523 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2431216 |
cattgtaccttttttagagggctattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaa |
2431315 |
T |
|
| Q |
524 |
gtagcatactttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtga |
615 |
Q |
| |
|
||| |||||||||||||||| | |||||||| | |||| |||||||||| ||| ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2431316 |
gtatcatactttgatttgcatgttacaagcacaacagatgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcttagtga |
2431407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 435 - 619
Target Start/End: Original strand, 2583953 - 2584137
Alignment:
| Q |
435 |
tttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactt |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2583953 |
tttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctaggtacttaaaagcagttctaagacaagaagtagcatactt |
2584052 |
T |
|
| Q |
535 |
tgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag |
619 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||| | |||||||| |||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
2584053 |
tgatttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacatcctagtaattcaagatgttcttagtgaaaag |
2584137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 407 - 619
Target Start/End: Complemental strand, 2574526 - 2574314
Alignment:
| Q |
407 |
tgatacacaagtattaacattgtacctttttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaag |
506 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574526 |
tgatacacaagtattaacattataccctcttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaag |
2574427 |
T |
|
| Q |
507 |
cagttctaagacaagaagtagcatactttgatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgt |
606 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| |||||| | ||| ||||| ||||||||||||| |
|
|
| T |
2574426 |
caattctaagacaagatgtagcttactttgatttgcatattacaagcacatcagaagtcatcaccagtgtctccaatgatagcctcgtaattcaagatgt |
2574327 |
T |
|
| Q |
607 |
ccttagtgaaaag |
619 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2574326 |
tattagcgaaaag |
2574314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 436 - 619
Target Start/End: Complemental strand, 2679078 - 2678895
Alignment:
| Q |
436 |
ttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatacttt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2679078 |
ttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctagatacttaaaagcagttctaagacaagaagtagcatacttt |
2678979 |
T |
|
| Q |
536 |
gatttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag |
619 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||| | |||||||| ||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
2678978 |
gatttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacagcctagtgattcaagatgttcttagtgaaaag |
2678895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 438 - 619
Target Start/End: Complemental strand, 2601897 - 2601716
Alignment:
| Q |
438 |
cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttga |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2601897 |
cagagggttattgttggacaagaacagatgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttttaagacaagaagtagcatactttga |
2601798 |
T |
|
| Q |
538 |
tttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaag |
619 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||| |||||| | ||| ||||| ||||||||||||| |||| |||||| |
|
|
| T |
2601797 |
tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctggtaattcaagatgttattagcgaaaag |
2601716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 2583641 - 2583764
Alignment:
| Q |
269 |
tttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattttat |
368 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | || | ||||||||||||| |||||||| |||||||||||||||| ||||| |||| | |
|
|
| T |
2583641 |
tttgactttatcaactttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtgagttttcagttttgt |
2583740 |
T |
|
| Q |
369 |
tactactttgtttttcacttctct |
392 |
Q |
| |
|
||||| |||| |||| |||||||| |
|
|
| T |
2583741 |
tactattttggtttttacttctct |
2583764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 2679501 - 2679438
Alignment:
| Q |
267 |
ggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctc |
330 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
2679501 |
ggtttgactttattaactttgtgatgcagaatgctcttgttttgttatatttggcatgtgcctc |
2679438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 2602677 - 2602546
Alignment:
| Q |
267 |
ggtttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaatttt |
366 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||||| || | |||||| |||| |||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
2602677 |
ggtttgactttattaactttttgatgcacaatgctgttctttttttatatctggcttgtgcctctttcgttgcttgcttcctaggtgagttttcagtttt |
2602578 |
T |
|
| Q |
367 |
attact-actttgtttttcacttctctttaat |
397 |
Q |
| |
|
||||| |||| |||||||||||||||||| |
|
|
| T |
2602577 |
gttactgtttttggttttcacttctctttaat |
2602546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 2616813 - 2616874
Alignment:
| Q |
269 |
tttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctc |
330 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
2616813 |
tttgactttgttaactttgtgatgcagaatgctgttgttttgttatatttggcatgtgcctc |
2616874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 2431147 - 2431200
Alignment:
| Q |
341 |
tgcttcctaggtgagctttcaattttattactactttgtttttcacttctcttt |
394 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
2431147 |
tgcttcctaggtgagttttcaattctattattattttggttttcacttctcttt |
2431200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 2574670 - 2574564
Alignment:
| Q |
267 |
ggtttgactttatcaa-ctttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctcnnnnnnnctttgcttcctaggtgagctttcaattt |
365 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||| || | ||||||||||| |||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
2574670 |
ggtttgactttattaaactttttgatgcagaatgctgttctttttttatatttggcatgtgcctcttttgttgcttgcttcctaggtgagttttcagttt |
2574571 |
T |
|
| Q |
366 |
tattact |
372 |
Q |
| |
|
| ||||| |
|
|
| T |
2574570 |
tgttact |
2574564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 439 - 615
Target Start/End: Complemental strand, 17875158 - 17874982
Alignment:
| Q |
439 |
agagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttgat |
538 |
Q |
| |
|
|||||| |||||||||||||| ||| ||| |||||||||||||||||||||| | ||||||||||||||| || || |||||||| || || |||||| |
|
|
| T |
17875158 |
agagggatattgttggacaaggacaagtggaagacaagctgcaagaatgagatacaagtacttaaaagcagtacttaggcaagaagttgcttattttgat |
17875059 |
T |
|
| Q |
539 |
ttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtga |
615 |
Q |
| |
|
||||| | |||||||| |||||| ||||||| | |||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
17875058 |
ttgcaggttacaagcacctcagaaatcatcactagtgtctctaatgacactattgtaattcaagatgttcttagtga |
17874982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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