View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4479-Insertion-4 (Length: 699)

Name: NF4479-Insertion-4
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4479-Insertion-4
NF4479-Insertion-4
[»] chr6 (15 HSPs)
chr6 (586-694)||(1507121-1507228)
chr6 (238-413)||(1507307-1507483)
chr6 (138-199)||(9838109-9838170)
chr6 (138-199)||(24949300-24949361)
chr6 (145-199)||(11129031-11129085)
chr6 (138-187)||(11676614-11676663)
chr6 (145-199)||(3621790-3621844)
chr6 (138-196)||(8176626-8176684)
chr6 (145-199)||(32359427-32359481)
chr6 (150-199)||(7056127-7056176)
chr6 (138-199)||(22050241-22050302)
chr6 (158-199)||(26485672-26485713)
chr6 (154-199)||(34379068-34379113)
chr6 (154-199)||(34607307-34607352)
chr6 (74-110)||(1507828-1507864)
[»] chr7 (19 HSPs)
chr7 (150-199)||(47459843-47459892)
chr7 (138-195)||(28608787-28608844)
chr7 (138-199)||(33258074-33258135)
chr7 (145-199)||(22950807-22950861)
chr7 (138-192)||(42841862-42841916)
chr7 (138-199)||(10227449-10227510)
chr7 (150-199)||(31815058-31815107)
chr7 (138-198)||(36298164-36298224)
chr7 (153-192)||(34368656-34368695)
chr7 (145-196)||(42881149-42881199)
chr7 (139-193)||(9142259-9142313)
chr7 (145-199)||(17896480-17896534)
chr7 (145-199)||(31430759-31430813)
chr7 (145-191)||(36340586-36340632)
chr7 (138-191)||(3838055-3838108)
chr7 (154-199)||(30866725-30866770)
chr7 (138-199)||(41675176-41675237)
chr7 (139-196)||(46715304-46715361)
chr7 (154-199)||(47408322-47408367)
[»] chr4 (27 HSPs)
chr4 (138-199)||(33809283-33809344)
chr4 (138-199)||(54231735-54231796)
chr4 (138-199)||(36659414-36659475)
chr4 (140-199)||(52061756-52061815)
chr4 (154-192)||(31861980-31862018)
chr4 (138-192)||(34464473-34464527)
chr4 (138-192)||(42629513-42629567)
chr4 (138-199)||(22828388-22828449)
chr4 (158-199)||(23719771-23719812)
chr4 (146-199)||(38027562-38027615)
chr4 (154-199)||(45725748-45725793)
chr4 (150-199)||(55935315-55935364)
chr4 (150-197)||(34603832-34603879)
chr4 (145-199)||(6195227-6195281)
chr4 (145-199)||(8735592-8735646)
chr4 (145-199)||(13629180-13629234)
chr4 (138-188)||(18135048-18135098)
chr4 (154-192)||(47596607-47596645)
chr4 (138-188)||(49122258-49122308)
chr4 (138-199)||(3036579-3036640)
chr4 (202-239)||(4571404-4571441)
chr4 (154-199)||(30939367-30939412)
chr4 (150-199)||(32239608-32239657)
chr4 (154-199)||(38617296-38617341)
chr4 (138-199)||(49089102-49089163)
chr4 (138-191)||(52677161-52677214)
chr4 (149-193)||(53467544-53467589)
[»] chr3 (17 HSPs)
chr3 (138-199)||(33874538-33874599)
chr3 (145-192)||(45513317-45513364)
chr3 (138-192)||(48152178-48152232)
chr3 (138-191)||(45145321-45145374)
chr3 (145-192)||(35315332-35315379)
chr3 (145-187)||(17102954-17102996)
chr3 (154-199)||(40010656-40010701)
chr3 (145-199)||(13158431-13158485)
chr3 (134-192)||(36234553-36234611)
chr3 (138-192)||(47104154-47104208)
chr3 (138-195)||(32980833-32980890)
chr3 (150-199)||(41351186-41351235)
chr3 (138-199)||(41926874-41926934)
chr3 (138-195)||(48214248-48214305)
chr3 (151-199)||(27483780-27483828)
chr3 (155-199)||(27992450-27992494)
chr3 (136-192)||(42515173-42515229)
[»] chr1 (29 HSPs)
chr1 (138-199)||(35700358-35700419)
chr1 (138-192)||(10507004-10507058)
chr1 (150-192)||(36850842-36850884)
chr1 (138-199)||(32168295-32168356)
chr1 (138-199)||(37437036-37437097)
chr1 (138-199)||(48174656-48174717)
chr1 (145-199)||(1024756-1024810)
chr1 (154-199)||(4100892-4100937)
chr1 (138-199)||(19929449-19929510)
chr1 (138-191)||(42800299-42800352)
chr1 (138-199)||(51613604-51613665)
chr1 (138-190)||(1038280-1038332)
chr1 (138-190)||(1045186-1045238)
chr1 (139-199)||(51972264-51972324)
chr1 (138-192)||(5598238-5598292)
chr1 (154-200)||(9127878-9127924)
chr1 (145-199)||(30686611-30686665)
chr1 (145-199)||(35483764-35483818)
chr1 (145-199)||(42787136-42787190)
chr1 (154-195)||(1428614-1428655)
chr1 (138-199)||(1677391-1677452)
chr1 (138-199)||(29830946-29831007)
chr1 (138-191)||(30702281-30702334)
chr1 (138-199)||(31487762-31487823)
chr1 (150-195)||(41155479-41155524)
chr1 (138-195)||(46096739-46096796)
chr1 (146-199)||(51974154-51974207)
chr1 (138-198)||(35255679-35255739)
chr1 (138-198)||(52649713-52649773)
[»] chr2 (16 HSPs)
chr2 (135-199)||(8443868-8443932)
chr2 (138-199)||(13849704-13849765)
chr2 (135-199)||(43077482-43077546)
chr2 (138-199)||(3376266-3376327)
chr2 (154-199)||(13215602-13215647)
chr2 (138-199)||(13965800-13965861)
chr2 (138-192)||(9706980-9707034)
chr2 (141-199)||(10263952-10264010)
chr2 (145-199)||(15893569-15893623)
chr2 (138-192)||(37116599-37116653)
chr2 (154-199)||(1259618-1259663)
chr2 (138-195)||(7529697-7529754)
chr2 (138-195)||(13000904-13000961)
chr2 (138-199)||(31011707-31011768)
chr2 (154-199)||(34262811-34262856)
chr2 (138-199)||(44360626-44360687)
[»] chr5 (29 HSPs)
chr5 (145-192)||(6689781-6689828)
chr5 (146-197)||(26906673-26906724)
chr5 (138-192)||(13703272-13703326)
chr5 (145-190)||(7466364-7466409)
chr5 (138-199)||(18437306-18437367)
chr5 (150-188)||(3892998-3893036)
chr5 (145-199)||(4427388-4427442)
chr5 (138-199)||(6008059-6008121)
chr5 (138-192)||(7408506-7408560)
chr5 (145-199)||(7579650-7579704)
chr5 (145-199)||(18000514-18000568)
chr5 (138-195)||(7834052-7834109)
chr5 (138-199)||(12722942-12723003)
chr5 (138-199)||(12784426-12784487)
chr5 (153-197)||(5143983-5144027)
chr5 (145-192)||(40198970-40199017)
chr5 (138-192)||(5119353-5119407)
chr5 (138-192)||(7734774-7734828)
chr5 (145-199)||(31803506-31803560)
chr5 (145-199)||(34261494-34261548)
chr5 (145-199)||(37809941-37809995)
chr5 (145-199)||(39073226-39073280)
chr5 (138-192)||(42911725-42911779)
chr5 (150-191)||(4017601-4017642)
chr5 (138-199)||(28024242-28024303)
chr5 (145-190)||(37633858-37633903)
chr5 (135-192)||(39893799-39893856)
chr5 (139-196)||(40927328-40927385)
chr5 (150-198)||(1795101-1795149)
[»] scaffold0343 (1 HSPs)
scaffold0343 (138-192)||(7617-7671)
[»] scaffold0009 (1 HSPs)
scaffold0009 (145-199)||(147114-147168)
[»] chr8 (23 HSPs)
chr8 (138-192)||(8672687-8672741)
chr8 (138-199)||(27911658-27911719)
chr8 (138-199)||(27958077-27958138)
chr8 (145-199)||(23793257-23793311)
chr8 (145-199)||(34982029-34982083)
chr8 (135-192)||(26740130-26740187)
chr8 (138-193)||(1739886-1739941)
chr8 (138-192)||(1245505-1245559)
chr8 (138-192)||(29091078-29091132)
chr8 (145-199)||(38482778-38482832)
chr8 (139-197)||(42352931-42352989)
chr8 (154-199)||(7483951-7483996)
chr8 (138-191)||(7605894-7605946)
chr8 (158-199)||(12342600-12342641)
chr8 (138-199)||(14061135-14061196)
chr8 (150-199)||(18842734-18842783)
chr8 (138-199)||(23848542-23848603)
chr8 (138-199)||(23855750-23855811)
chr8 (150-199)||(35029751-35029800)
chr8 (154-199)||(35296253-35296298)
chr8 (150-199)||(41701468-41701517)
chr8 (154-195)||(43641979-43642020)
chr8 (136-192)||(3720871-3720927)
[»] scaffold0002 (1 HSPs)
scaffold0002 (145-199)||(148503-148557)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 586 - 694
Target Start/End: Complemental strand, 1507228 - 1507121
Alignment:
Q  586 atatcattcgatcaacacacttgatcttcatatcgttatgatacttgtaaatacaagagtcttggttacttgaggcaatgttacttcattcattaatgtg 685  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1507228 atatcatacgatcaacacacttgatcttcagagcgttatgatacttataaatacaagaatct-ggttacttgaggcaatgttacttcattcattaatgtg 1507130  T
Q  686 atttcattt 694  Q
    |||| ||||    
T  1507129 attttattt 1507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 238 - 413
Target Start/End: Complemental strand, 1507483 - 1507307
Alignment:
Q  238 tcatgcatgtttgaacttagtttattttctggtatgtgaattttagattcaaacttcatgcaaacgagttcatttattct-tacacaagagttagatatc 336  Q
    |||| |||||||||| |||||||||||||| |||||| ||||| ||||||||||||||| ||||  |||| |||| || | ||| ||||||||  | |||    
T  1507483 tcatccatgtttgaagttagtttattttctagtatgtaaattt-agattcaaacttcatacaaagcagttgattttttttatacgcaagagttgaagatc 1507385  T
Q  337 gaatctctaaccacatacttaagggcc-caaatatcttatcacttgttttgcaatgtcggtatacatcaattattgta 413  Q
    |||  ||| | |||||||||||||||| ||||| ||| |||||||||||| |||||||||| ||||||||| ||||||    
T  1507384 gaacatctgatcacatacttaagggcctcaaatctctcatcacttgttttacaatgtcggtttacatcaatgattgta 1507307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 9838170 - 9838109
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9838170 ttattgattgttttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaacagaggta 9838109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 24949300 - 24949361
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  24949300 ttattgattgttttggtttgtgtaaaatatcaaaaaataacaattaaaaaggaacggaggta 24949361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 11129031 - 11129085
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  11129031 ttgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 11129085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 11676663 - 11676614
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaa 187  Q
    |||||| |||| ||| |||||||||||||||||||| |||||||||||||    
T  11676663 ttattgattgtcttggtttgtgtaaaatatcaaaaagtaacaattaaaaa 11676614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 3621790 - 3621844
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  3621790 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 3621844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 8176626 - 8176684
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 196  Q
    |||||| |||| |||||||||||||||| | ||||| | ||||||||||| ||||||||    
T  8176626 ttattgattgtcttgatttgtgtaaaatgttaaaaagtgacaattaaaaaagaacagag 8176684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 32359481 - 32359427
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| ||||| |||||||||||||  |||||||||||||||||| ||||||    
T  32359481 ttgtcttggtttgtataaaatatcaaaatgtaacaattaaaaaggaacggaggta 32359427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 7056176 - 7056127
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||| ||||||| | ||||||||||||| || ||||||    
T  7056176 ttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggtacggaggta 7056127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 22050241 - 22050302
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  22050241 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 22050302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 26485713 - 26485672
Alignment:
Q  158 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  26485713 tgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 26485672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 34379068 - 34379113
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  34379068 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 34379113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 34607307 - 34607352
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  34607307 tttgtataaaatgtcaaaaattaacaattaaaaaggaacggaggta 34607352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 1507864 - 1507828
Alignment:
Q  74 ctcatttttactttcactatcttagttgaaaatttta 110  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  1507864 ctcatttttactctcactatcttaattgaaaatttta 1507828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 47459843 - 47459892
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47459843 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacggaggta 47459892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 28608787 - 28608844
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||    
T  28608787 ttattgattgtcttgatttgtgtaaaatatcaaaatatgacaattaaaaaggaacaga 28608844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 33258074 - 33258135
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33258074 ttattgattgtattgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 33258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 22950861 - 22950807
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  22950861 ttgtcttggtttgtgtaaaatgtcaaaatataacaattaaaaaggaacagaggta 22950807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 42841916 - 42841862
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||    
T  42841916 ttattgattgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 42841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 10227449 - 10227510
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| | ||||| | |||||||||||||||| ||||||    
T  10227449 ttattgattgtcttgatttgtgtaaaatgttaaaaagtgacaattaaaaaggaacggaggta 10227510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 31815107 - 31815058
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||| | ||||||| |||||||||||||||| ||||||    
T  31815107 ttgatttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 31815058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 36298224 - 36298164
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 198  Q
    |||||| ||||||||||||||||||||| ||||||  | ||||||||||| ||| ||||||    
T  36298224 ttattgattgttttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaagaagagaggt 36298164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 34368695 - 34368656
Alignment:
Q  153 atttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  34368695 atttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 34368656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 42881149 - 42881199
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 196  Q
    |||| ||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  42881149 ttgtcttggtttgtataaaatatcaaaa-ataacaattaaaaaggaacagag 42881199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 9142313 - 9142259
Alignment:
Q  139 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaaca 193  Q
    |||| ||||| |||||||||||||||  |||||| | ||||||||||||||||||    
T  9142313 tatttgttgtcttgatttgtgtaaaaagtcaaaataaaacaattaaaaaggaaca 9142259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 17896534 - 17896480
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  17896534 ttgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 17896480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 31430759 - 31430813
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  31430759 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 31430813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 36340586 - 36340632
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||| ||| |||||||||||| | |||||||||||||||||||||||    
T  36340586 ttgtcttggtttgtgtaaaatgtaaaaaaataacaattaaaaaggaa 36340632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 3838055 - 3838108
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||| |||||||| ||||||| ||||||| | |||||||||||||||    
T  3838055 ttattgattgtcttgatttgcgtaaaatgtcaaaaagtgacaattaaaaaggaa 3838108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 30866770 - 30866725
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||| ||||||||| ||| |||||||||||| ||||||    
T  30866770 tttgtgtaaaatgtcaaaaaatgacagttaaaaaggaacggaggta 30866725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 41675237 - 41675176
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| ||| |||||||| ||||||  | |||||||||||||||||||||||    
T  41675237 ttattgattgtcttggtttatgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 41675176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 46715361 - 46715304
Alignment:
Q  139 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 196  Q
    |||| ||||| |||||||||||||||  ||||||  | ||||||||||||||||||||    
T  46715361 tatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaaggaacagag 46715304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 47408322 - 47408367
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||| ||||||| | |||||||||||||||| ||||||    
T  47408322 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 47408367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 33809283 - 33809344
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||    
T  33809283 ttattgattgttttgatttgtgtaaaatgttaaaaagtgacaattaaaaaggaacagaggta 33809344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 54231735 - 54231796
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  54231735 ttattgattgtcttgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 54231796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 36659475 - 36659414
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||||| |||||||| ||||||| ||||||    
T  36659475 ttattgattgtcttgatttgtgtaaaatgtcaaaaaatgacaattaagaaggaacggaggta 36659414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 52061756 - 52061815
Alignment:
Q  140 attggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||| |||||||||||||||| |||||| || |||||||||||||||| ||||||    
T  52061756 attgattgtcttgatttgtgtaaaatgtcaaaatatgacaattaaaaaggaacggaggta 52061815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 31862018 - 31861980
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  31862018 tttgtgtaaaatttcaaaaaataacaattaaaaaggaac 31861980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 34464473 - 34464527
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| ||||||| |||||| |||||||||||||  ||||||||||||||||||    
T  34464473 ttattgattgttttaatttgtataaaatatcaaaatgtaacaattaaaaaggaac 34464527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 42629513 - 42629567
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||| |||||||||||||||||||||| ||||||||||| ||||    
T  42629513 ttattgattgtcttggtttgtgtaaaatatcaaaaaatgacaattaaaaacgaac 42629567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 22828449 - 22828388
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  22828449 ttattggttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 22828388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 23719812 - 23719771
Alignment:
Q  158 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  23719812 tgtaaaatgtcaaaaaataacaattaaaaaggaacggaggta 23719771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 38027615 - 38027562
Alignment:
Q  146 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||| ||| |||||||||||||||| | |||||||||||||||| ||||||    
T  38027615 tgttttggtttatgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 38027562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 45725748 - 45725793
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  45725748 tttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 45725793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 55935315 - 55935364
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||||||    
T  55935315 ttgatttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 55935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 34603832 - 34603879
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 197  Q
    ||||||||||||||| |||||||  | |||||||||||||||||||||    
T  34603832 ttgatttgtgtaaaaaatcaaaatgtgacaattaaaaaggaacagagg 34603879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 6195227 - 6195281
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||| ||||| ||||||| | |||||||||||||||||||||||    
T  6195227 ttgtcttggtttgtgaaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 6195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 8735592 - 8735646
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  8735592 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 8735646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 13629234 - 13629180
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||| ||||||  | |||||||||||||||||||||||    
T  13629234 ttgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 13629180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 18135098 - 18135048
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaag 188  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  18135098 ttattgattgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaag 18135048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 47596645 - 47596607
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  47596645 tttgtgtaaaatgtcaaaaaatgacaattaaaaaggaac 47596607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 49122308 - 49122258
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaag 188  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  49122308 ttattgattgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaag 49122258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 3036579 - 3036640
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| ||||| |||||| |||||||| | |||| || |||||||||||||||| ||||||    
T  3036579 ttattgattgttatgatttatgtaaaatgtaaaaatatgacaattaaaaaggaacggaggta 3036640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 4571404 - 4571441
Alignment:
Q  202 aaaagaaggctcttggaagttagaaaaaacatgacatc 239  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  4571404 aaaagaaggctcttggaagttagaaaacatatgacatc 4571441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 30939367 - 30939412
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||    
T  30939367 tttgtgtaaaaaatcaaaatatgacaattaaaaaggaacggaggta 30939412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 32239608 - 32239657
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||| |||||    
T  32239608 ttgatttgtataaaatatcaaagtataacaattaaaaatgaacaaaggta 32239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 38617341 - 38617296
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||  | |||||||||||||||| ||||||    
T  38617341 tttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 38617296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 49089102 - 49089163
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| || | ||||||||||||||| | |||||||||||||||| ||||||    
T  49089102 ttattgattgtcttggttcgagtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 49089163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 52677214 - 52677161
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||||||| |||||||||||| ||||||  | |||||||||||||||    
T  52677214 ttattgattgttttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaa 52677161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 53467589 - 53467544
Alignment:
Q  149 tttgatttgtgtaaaatatc-aaaaaataacaattaaaaaggaaca 193  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||    
T  53467589 tttgatttgtgtaaaatgtcaaaaaaatgacaattaaaaaggaaca 53467544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 33874599 - 33874538
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||    
T  33874599 ttattgattgttttggtttgtgtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 33874538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 45513364 - 45513317
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||    
T  45513364 ttgttttgatttgtgtaaaatatcaaaatatgacaattaaaaaggaac 45513317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 48152178 - 48152232
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  48152178 ttattgattgtattgatttgtgtaaaatataaaaaaatgacaattaaaaaggaac 48152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 45145321 - 45145374
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||| ||| |||||||||||||||||||||| |||||||||||||||    
T  45145321 ttattgattgtcttggtttgtgtaaaatatcaaaaaatgacaattaaaaaggaa 45145374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 35315332 - 35315379
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  35315332 ttgtcttgatttgtgtaaaatgtcaaaaaatgacaattaaaaaggaac 35315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 17102954 - 17102996
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaa 187  Q
    ||||||| ||||||||||||| |||||||||||||||||||||    
T  17102954 ttgttttaatttgtgtaaaatgtcaaaaaataacaattaaaaa 17102996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 40010701 - 40010656
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||    
T  40010701 tttgtgtaaaatatcaaaaagtaacacttaaaaaggaacggaggta 40010656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 13158485 - 13158431
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| ||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  13158485 ttgtcttggtttatgtaaaatgtcaaaatataacaattaaaaaggaacggaggta 13158431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 36234553 - 36234611
Alignment:
Q  134 tcacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| ||| |||| || ||||||||||||||||||||  | ||||||||||||||||    
T  36234553 tcactttttgattgtcttaatttgtgtaaaatatcaaaatgtgacaattaaaaaggaac 36234611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 47104208 - 47104154
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||||||||||| |||||||| ||||||| |  |||||||||||||||    
T  47104208 ttattgattgttttgatttatgtaaaatgtcaaaaagtggcaattaaaaaggaac 47104154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 32980833 - 32980890
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||||||    
T  32980833 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacaga 32980890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 41351235 - 41351186
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||| |||||||||||| ||| | |||||||||||||||| ||||||    
T  41351235 ttgatttatgtaaaatatcagaaagtgacaattaaaaaggaacggaggta 41351186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 41926874 - 41926934
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| | ||||| | |||||||||||||||||||||||    
T  41926874 ttattgattgtcttggtttgtgtaaaatgt-aaaaagtgacaattaaaaaggaacagaggta 41926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 48214248 - 48214305
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| |||| ||| | |||||||||| ||||||| | |||||||||||||||||||    
T  48214248 ttattgattgtattggtgtgtgtaaaatgtcaaaaagtgacaattaaaaaggaacaga 48214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 27483828 - 27483780
Alignment:
Q  151 tgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||| | |||| || |||||||||||||||||||||||    
T  27483828 tgatttgtataaaatgttaaaatatgacaattaaaaaggaacagaggta 27483780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 27992450 - 27992494
Alignment:
Q  155 ttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||    
T  27992450 ttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacagaggta 27992494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 42515229 - 42515173
Alignment:
Q  136 acttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||| |||| ||| |||||||||||| | ||||| | ||||||||||||||||    
T  42515229 acttattgattgtcttggtttgtgtaaaatgttaaaaagttacaattaaaaaggaac 42515173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 35700419 - 35700358
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  35700419 ttattgattgtcttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaacggaggta 35700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 10507004 - 10507058
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  10507004 ttattgattgtcttgatttgtgtaaaatatcacaaaatgacaattaaaaaggaac 10507058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 36850842 - 36850884
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  36850842 ttgatttgtgtaaaatatcaaaaaatgacaattaaaaaggaac 36850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 32168356 - 32168295
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||||||||||| | |||||||||||||||| ||||||    
T  32168356 ttattgattgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 32168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 37437097 - 37437036
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  37437097 ttattgattgtcttggtttgtgtaaaatgtcaaaatatgacaattaaaaaggaacagaggta 37437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 48174717 - 48174656
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||||||||||| | | |||||||||||||| ||||||    
T  48174717 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgataattaaaaaggaacggaggta 48174656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 1024756 - 1024810
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  1024756 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 1024810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4100937 - 4100892
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||    
T  4100937 tttgtgtaaaatatcaaaaagtaataattaaaaaggaacggaggta 4100892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 19929510 - 19929449
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| | ||||||| |||||||||||||||| ||||||    
T  19929510 ttattgattgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 19929449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 42800299 - 42800352
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||||||| |||||||||||| ||||||| | |||||||||||||||    
T  42800299 ttattgattgttttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 42800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 51613604 - 51613665
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||||| ||||| | |||||||||||||||| ||||||    
T  51613604 ttattgattgtcttggtttgtgtaaaatataaaaaagtgacaattaaaaaggaacggaggta 51613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1038280 - 1038332
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 190  Q
    |||||| |||| || ||| |||||||||||| |||||||||||||||||||||    
T  1038280 ttattgattgtctttattcgtgtaaaatatctaaaaataacaattaaaaagga 1038332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 1045186 - 1045238
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 190  Q
    |||||| |||| || ||| |||||||||||| |||||||||||||||||||||    
T  1045186 ttattgattgtctttattcgtgtaaaatatctaaaaataacaattaaaaagga 1045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 51972324 - 51972264
Alignment:
Q  139 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||| |||| || ||||||||||||| ||||||| |||||||||||||  ||||||||||    
T  51972324 tattgattgtcttaatttgtgtaaaatgtcaaaaagtaacaattaaaaaataacagaggta 51972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 5598238 - 5598292
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||| |||||||||||| |||||| || ||||||||||||||||    
T  5598238 ttattgattgtcttggtttgtgtaaaatgtcaaaatatgacaattaaaaaggaac 5598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 9127878 - 9127924
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggtac 200  Q
    |||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  9127878 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagatgtac 9127924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30686611 - 30686665
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  30686611 ttgtcttggtttgtgtaaaatatcaaaacgtgacaattaaaaaggaacggaggta 30686665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 35483818 - 35483764
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||| |||||| || ||||||||||| |||| ||||||    
T  35483818 ttgttttggtttgtgtaaaatgtcaaaatatgacaattaaaaaagaacggaggta 35483764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 42787190 - 42787136
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||||||  ||||||| ||||||||| |||||||||||||||| ||||||    
T  42787190 ttgtcttgatttaggtaaaatgtcaaaaaatgacaattaaaaaggaacggaggta 42787136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 1428614 - 1428655
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||||||||| ||||||||| ||| |||||||||||||||    
T  1428614 tttgtgtaaaatgtcaaaaaatgacagttaaaaaggaacaga 1428655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 1677391 - 1677452
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||  | |||||||||||||| | ||||||    
T  1677391 ttattgattgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggagcggaggta 1677452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 29830946 - 29831007
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  29830946 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 29831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 30702334 - 30702281
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||    
T  30702334 ttattgattgtattggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 30702281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 31487823 - 31487762
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  31487823 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 31487762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 41155479 - 41155524
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||    
T  41155479 ttgatttgtgtaaaatgtcaaaataagacaattaaaaaggaacaga 41155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 46096739 - 46096796
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| |||| ||||| ||| |||||||||||||| | |||||||| ||||||||||    
T  46096739 ttattgattgtattgatgtgtataaaatatcaaaaagtgacaattaagaaggaacaga 46096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 51974207 - 51974154
Alignment:
Q  146 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||| || ||||||||| ||||||| | |||||||||||||||| ||||||    
T  51974207 tgttttggttcgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 51974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 35255679 - 35255739
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 198  Q
    |||||| |||| ||| ||| |||||||| ||||||| | |||||||||||| |||||||||    
T  35255679 ttattgattgtcttggtttatgtaaaatgtcaaaaagtgacaattaaaaagtaacagaggt 35255739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 52649773 - 52649713
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 198  Q
    |||||| |||| |||||| ||| ||||| ||||||| | |||||||||||||||| |||||    
T  52649773 ttattgattgtcttgattagtgaaaaatgtcaaaaagtgacaattaaaaaggaacggaggt 52649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 8443868 - 8443932
Alignment:
Q  135 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  8443868 cacttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacagaggta 8443932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 13849765 - 13849704
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||||||| ||| | |||||||||||||||| |||||||||||||||| ||||||    
T  13849765 ttattgattgttttggtttatataaaatatcaaaaaatgacaattaaaaaggaacggaggta 13849704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 43077482 - 43077546
Alignment:
Q  135 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||| |||| ||| |||||||||||| | ||||||| |||||||||||||||| ||||||    
T  43077482 cacttattgattgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacggaggta 43077546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 3376327 - 3376266
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  3376327 ttattgattgtcttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 3376266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 13215602 - 13215647
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||    
T  13215602 tttgtgtaaaatgtcaaaaagtaacaattaaaaaggaacggaggta 13215647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 13965800 - 13965861
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||| | |||||||||||||||| ||||||    
T  13965800 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 13965861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 9706980 - 9707034
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||| |||||||||||| ||||||| | ||||||||||||||||    
T  9706980 ttattgattgtattggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaac 9707034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 10263952 - 10264010
Alignment:
Q  141 ttggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| ||| |||||||||||| |||||| || |||||| ||||||||| ||||||    
T  10263952 ttggttgtcttggtttgtgtaaaatgtcaaaatatgacaatttaaaaggaacggaggta 10264010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 15893623 - 15893569
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  15893623 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 15893569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 37116653 - 37116599
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    ||||||||||| ||| |||||||||||| ||| | ||| ||||||||||||||||    
T  37116653 ttattggttgtcttggtttgtgtaaaatgtcagagaatgacaattaaaaaggaac 37116599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 1259663 - 1259618
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||  |||||||||||||| ||| ||||||    
T  1259663 tttgtgtaaaatatcaaaatgtaacaattaaaaagaaacggaggta 1259618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 7529754 - 7529697
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    ||||| ||||| || ||||||||||||   |||||||| |||||||||||||||||||    
T  7529754 ttattagttgtcttcatttgtgtaaaaagacaaaaaatgacaattaaaaaggaacaga 7529697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 13000961 - 13000904
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| |||| || ||||||||||||| ||| ||| ||||||||||||| |||||||    
T  13000961 ttattgattgtcttaatttgtgtaaaatgtcacaaagtaacaattaaaaaagaacaga 13000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 31011768 - 31011707
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| ||||| |||||| ||||||  |||||||||||||||||| ||||||    
T  31011768 ttattgattgtcttggtttgtataaaatgtcaaaatgtaacaattaaaaaggaacggaggta 31011707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 34262856 - 34262811
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||| ||||| | |||||||||||||||| ||||||    
T  34262856 tttgtgtaaaatataaaaaattgacaattaaaaaggaacggaggta 34262811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 44360626 - 44360687
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||  | |||||||||||||||| ||||||    
T  44360626 ttattgattgtcttggtttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 44360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 6689781 - 6689828
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6689781 ttgttttgatttgtgtaaaatgtaaaaaaataacaattaaaaaggaac 6689828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 26906673 - 26906724
Alignment:
Q  146 tgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 197  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  26906673 tgttttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacagagg 26906724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 13703272 - 13703326
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||    
T  13703272 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 13703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 7466364 - 7466409
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 190  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||    
T  7466364 ttgtcttgatttatgtaaaatatcaaaaaataacaattaaaaagga 7466409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 18437367 - 18437306
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||||||||||| | |||||||||||||||| ||||||    
T  18437367 ttattgattgtattggtttgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 18437306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 3892998 - 3893036
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaag 188  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3892998 ttgatttgtgtaaaatgtcaaaaaataacaattaaaaag 3893036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 4427442 - 4427388
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||    
T  4427442 ttgtcttgattcgtgtaaaatatcaaaaagtgacaattaaaaaggaacggaggta 4427388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 6008059 - 6008121
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaa-taacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| ||||||||||||||||||||| | |||||||||||||||| ||||||    
T  6008059 ttattgattgtattggtttgtgtaaaatatcaaaaaagtgacaattaaaaaggaacggaggta 6008121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 7408506 - 7408560
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||||||| |||||||||||| |||||| || ||||||||||||||||    
T  7408506 ttattgattgttttggtttgtgtaaaatgtcaaaagatgacaattaaaaaggaac 7408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 7579704 - 7579650
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  7579704 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 7579650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 18000514 - 18000568
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||| ||||||  |||||||||||||||||| ||||||    
T  18000514 ttgttttggtttgtgtaaaatgtcaaaaggtaacaattaaaaaggaacggaggta 18000568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 7834109 - 7834052
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||| || |||||||||||||||||||||||||  | |||||||||||| ||||||    
T  7834109 ttattgattattttgatttgtgtaaaatatcaaaaggtgacaattaaaaagaaacaga 7834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 12723003 - 12722942
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||| | | |||||||||||||||||||||    
T  12723003 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgagaattaaaaaggaacagaggta 12722942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 12784487 - 12784426
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| ||||||| | | |||||||||||||||||||||    
T  12784487 ttattgattgtcttggtttgtgtaaaatgtcaaaaagtgagaattaaaaaggaacagaggta 12784426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 5144027 - 5143983
Alignment:
Q  153 atttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 197  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  5144027 atttgtgtaaaatatcaaaaaataacggttaaaaaggaacggagg 5143983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 40198970 - 40199017
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||| ||||| |||||||||||||||||| ||||||||||||| ||||    
T  40198970 ttgtcttgatctgtgtaaaatatcaaaaagtaacaattaaaaaagaac 40199017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 5119353 - 5119407
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| || |||||| |||||||| ||||||| ||||||||||||||||    
T  5119353 ttattgattgtattaatttgtataaaatattaaaaaatgacaattaaaaaggaac 5119407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 7734828 - 7734774
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||||||| |||||||| | ||||||| ||||||||||||||||    
T  7734828 ttattgattgtcttgatttatgtaaaatttgaaaaaatgacaattaaaaaggaac 7734774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 31803506 - 31803560
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| |||||||||||||||| ||||||| | ||||||||||| |||| ||||||    
T  31803506 ttgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaagaacggaggta 31803560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 34261494 - 34261548
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| ||||| |||||| |||||| || |||||||||||||||||||||||    
T  34261494 ttgtcttggtttgtctaaaatgtcaaaatatgacaattaaaaaggaacagaggta 34261548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 37809941 - 37809995
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||| | |||||||||||||| | ||||||    
T  37809941 ttgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaaggatcggaggta 37809995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 39073226 - 39073280
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  39073226 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 39073280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 42911725 - 42911779
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||| |||||||||||||||||||  | ||||||||||||||||    
T  42911725 ttattgattgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaac 42911779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 4017601 - 4017642
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  4017601 ttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaa 4017642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 28024303 - 28024242
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| || ||||||||| |||||| || |||||||||||||||| ||||||    
T  28024303 ttattgattgtcttggttggtgtaaaatgtcaaaatatgacaattaaaaaggaacggaggta 28024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 37633858 - 37633903
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaagga 190  Q
    |||| ||| |||||||||||||||||||| | ||||||||||||||    
T  37633858 ttgtcttggtttgtgtaaaatatcaaaaagtgacaattaaaaagga 37633903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 39893856 - 39893799
Alignment:
Q  135 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    ||||||||| || ||||| |||||||||||| | ||||| | ||||||||||||||||    
T  39893856 cacttattgattattttggtttgtgtaaaatgttaaaaagtgacaattaaaaaggaac 39893799  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 40927328 - 40927385
Alignment:
Q  139 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagag 196  Q
    |||| ||||| || |||||||||||| |||||||  | ||||||||||||||||||||    
T  40927328 tatttgttgtcttaatttgtgtaaaaaatcaaaacgtgacaattaaaaaggaacagag 40927385  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 1795149 - 1795101
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggt 198  Q
    |||||||||||||||| ||||||| ||||  |||||||||||| |||||    
T  1795149 ttgatttgtgtaaaatgtcaaaaagtaaccgttaaaaaggaacggaggt 1795101  T

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Target: scaffold0343 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 7617 - 7671
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||    
T  7617 ttattgattgtcttgatttgtgtaaaatatcaaaaagtgacaattaaaaaggaac 7671  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 147168 - 147114
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||    
T  147168 ttgttttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacggaggta 147114  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 8672687 - 8672741
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| || ||||| |||||||||||||||||||||| ||||||||||||||||    
T  8672687 ttattgattattttggtttgtgtaaaatatcaaaaaatgacaattaaaaaggaac 8672741  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 27911719 - 27911658
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||||||||| ||||||||| || ||||||    
T  27911719 ttattgattgtcttgatttgtgtaaaatgtcaaaaaataacacttaaaaaggtacggaggta 27911658  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 27958138 - 27958077
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| |||||||||||||||| ||||||||||||| ||||||||| || ||||||    
T  27958138 ttattgattgtcttgatttgtgtaaaatgtcaaaaaataacacttaaaaaggtacggaggta 27958077  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 23793311 - 23793257
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||| | ||||||| |||||||||||||||||||||||    
T  23793311 ttgtcttggtttgtgtaaaatgttaaaaaatgacaattaaaaaggaacagaggta 23793257  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 34982029 - 34982083
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  34982029 ttgttttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 34982083  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 26740187 - 26740130
Alignment:
Q  135 cacttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    ||||||||| |||| ||| |||||||||||| ||||||| | ||||||||||||||||    
T  26740187 cacttattgattgtcttggtttgtgtaaaatgtcaaaaagtgacaattaaaaaggaac 26740130  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 1739886 - 1739941
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaaca 193  Q
    |||||| |||| ||||||| |||||||| ||||||| | |||||||||||||||||    
T  1739886 ttattgattgtgttgatttatgtaaaatgtcaaaaagtgacaattaaaaaggaaca 1739941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 1245505 - 1245559
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| ||||||| |||||||| ||||||| | ||||||||||||||||    
T  1245505 ttattgattgtcttgatttatgtaaaatgtcaaaaagtgacaattaaaaaggaac 1245559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 29091132 - 29091078
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||| |||| |||||||||||||||| ||||||| | ||||||||||| ||||    
T  29091132 ttattgattgtcttgatttgtgtaaaatgtcaaaaagtgacaattaaaaaagaac 29091078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 38482832 - 38482778
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| |||||||||||||||||||  | |||||||||||||||| ||||||    
T  38482832 ttgtcttggtttgtgtaaaatatcaaaatgtgacaattaaaaaggaacggaggta 38482778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 42352931 - 42352989
Alignment:
Q  139 tattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagagg 197  Q
    |||| ||||||||| |||||||||||  |||||| || |||||||||||| ||||||||    
T  42352931 tatttgttgttttggtttgtgtaaaaagtcaaaacatgacaattaaaaagaaacagagg 42352989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 7483951 - 7483996
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  7483951 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 7483996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 7605946 - 7605894
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaa 191  Q
    |||||| |||| |||||||||||||||| | ||||| |||||||||||||||||    
T  7605946 ttattgattgtcttgatttgtgtaaaatgttaaaaa-taacaattaaaaaggaa 7605894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 12342641 - 12342600
Alignment:
Q  158 tgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||| |||||| || |||||||||||||||||||||||    
T  12342641 tgtaaaatgtcaaaatatgacaattaaaaaggaacagaggta 12342600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 14061196 - 14061135
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| |||||||||||| | ||||| | |||||||||||||||| ||||||    
T  14061196 ttattgattgtcttggtttgtgtaaaatgttaaaaagtgacaattaaaaaggaacggaggta 14061135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 18842734 - 18842783
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||| ||||||  | |||||||||||||||| ||||||    
T  18842734 ttgatttgtgtaaaatgtcaaaatgtgacaattaaaaaggaacggaggta 18842783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 23848603 - 23848542
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| ||||||| |||| ||||||  | |||||||||||||||||||||||    
T  23848603 ttattgattgtcttggtttgtgtcaaatgtcaaaatgtgacaattaaaaaggaacagaggta 23848542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 23855750 - 23855811
Alignment:
Q  138 ttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||| |||| ||| ||| |||||||| ||||||||| || ||||||||||||| ||||||    
T  23855750 ttattgattgtattggtttatgtaaaatgtcaaaaaatgacgattaaaaaggaacggaggta 23855811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 35029751 - 35029800
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    ||||||||| |||||| | ||||||| |||||||||||||||| ||||||    
T  35029751 ttgatttgtataaaatgttaaaaaatgacaattaaaaaggaacggaggta 35029800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 35296253 - 35296298
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||||    
T  35296253 tttgtgtaaaatatcaaaaagtgacagttaaaaaggaacggaggta 35296298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 41701517 - 41701468
Alignment:
Q  150 ttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||||||||||||||||| ||||| | ||| |||||||||||| ||||||    
T  41701517 ttgatttgtgtaaaatattaaaaagtgacagttaaaaaggaacggaggta 41701468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 43642020 - 43641979
Alignment:
Q  154 tttgtgtaaaatatcaaaaaataacaattaaaaaggaacaga 195  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  43642020 tttgtgtaaaatgtcaaaaagtgacaattaaaaaggaacaga 43641979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 3720871 - 3720927
Alignment:
Q  136 acttattggttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaac 192  Q
    |||||||| |||||||  |||||||||||| | ||||| | ||||||||||||||||    
T  3720871 acttattgattgttttagtttgtgtaaaatgttaaaaagtgacaattaaaaaggaac 3720927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 148503 - 148557
Alignment:
Q  145 ttgttttgatttgtgtaaaatatcaaaaaataacaattaaaaaggaacagaggta 199  Q
    |||| ||| ||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  148503 ttgtcttggtttatgtaaaatgtcaaaatataacaattaaaaaggaacggaggta 148557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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