View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479-Insertion-6 (Length: 268)
Name: NF4479-Insertion-6
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 34278004 - 34277754
Alignment:
| Q |
8 |
catgtgatactattattctcttccatctgaggtatcagatctgggtcagacaggttttaagtttaaggttgtttttggtacctaggattacgatgtgtaa |
107 |
Q |
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| T |
34278004 |
catgtgatactattattctcttccatctgaggtatcagatctgggtcagacaggttttaagtttaaggttgtttttggtacctaggattacgatgtgtaa |
34277905 |
T |
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| Q |
108 |
ctgttcnnnnnnnnnnnnnnnnnnnntactggcagatctttaagcaccaaccaatatcgatcttcacttattattactaacaaccacacactcatctcgt |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34277904 |
ctgttcctctctctct----------tactggcagatctttaagcaccaaccaatgtcgatcttcacttattattactaacaaccacacactcatctcgt |
34277815 |
T |
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| Q |
208 |
ttctacatctatatatacatcatttttcaaccttcttcataccactcacatctctcaaccc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34277814 |
ttctacatctatatatacatcatttttcaaccttcttcataccactcacatctctcaaccc |
34277754 |
T |
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