View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479-Insertion-7 (Length: 250)
Name: NF4479-Insertion-7
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 27329501 - 27329258
Alignment:
| Q |
8 |
gttaagtcatattttttaatgattttt-gttgtaatgttgcacttaattcaggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagtagga |
106 |
Q |
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| T |
27329501 |
gttaagtcatattttttaatgattttttgttgtaatgttgcacttaattcaggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagtaaga |
27329402 |
T |
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| Q |
107 |
atgatgcttaacaaaacggaaaatgagcttaatcaacttgagcttattgatgtattgcaaaggcttggagtgtcttaccattttaataatgaaattaggg |
206 |
Q |
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| T |
27329401 |
atgatgcttaacaaaacggaaaatgagcttactcaacttgagcttattgatgtattgcaaaggcttggagtgtcttaccattttaacaatgaaattaggg |
27329302 |
T |
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| Q |
207 |
acatattggataacatttacaacaaacaaacattcaagttgaag |
250 |
Q |
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| T |
27329301 |
acatattggataacatttacaacaaacaaacattcaagttgaag |
27329258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 27446961 - 27446767
Alignment:
| Q |
56 |
caggaagtaatgtacagaaagcaatgctcaattctaaaggaaaaagtaggaatgatgcttaacaaaacggaaaatgagcttaatcaacttgagcttattg |
155 |
Q |
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| T |
27446961 |
caggaagtaaagcacacaaaggaattcttaatgctaaaggaaaaagtaagaatgatgtttaacaaaatggaaaatgagattgatcaacttgaatttattg |
27446862 |
T |
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| Q |
156 |
atgtattgcaaaggcttggagtgtcttaccattttaataatgaaattagggacatattggataacatttacaacaaacaaacattcaagttgaag |
250 |
Q |
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| T |
27446861 |
atgtattgcaaaggcttggtgtggcttatcaatttaacaatgaaatagggaaaatattggacaacatttacaactcacaaacatccatgttgaag |
27446767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 18839585 - 18839710
Alignment:
| Q |
125 |
gaaaatgagcttaatcaacttgagcttattgatgtattgcaaaggcttggagtgtcttaccattttaataatgaaattagggacatattggataacattt |
224 |
Q |
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| T |
18839585 |
gaaaacgagcttgatcaacttgagtttattgatgtattgcaaaggattggagtgtcttaccattttaacaatgaaattagggatatattggacaacattt |
18839684 |
T |
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| Q |
225 |
acaacaaacaaacattcaagttgaag |
250 |
Q |
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| T |
18839685 |
acaacaaacaaacatccaagttgaag |
18839710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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