View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479-Insertion-8 (Length: 64)
Name: NF4479-Insertion-8
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-24
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 17925549 - 17925493
Alignment:
| Q |
8 |
tgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
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| T |
17925549 |
tgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga |
17925493 |
T |
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Target: chr6 (Bit Score: 49; Significance: 8e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-20
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 12905252 - 12905308
Alignment:
| Q |
8 |
tgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12905252 |
tgcaacaacttattctcagcaataattcttttgtaggtgagattcctacaaacctga |
12905308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12897643 - 12897687
Alignment:
| Q |
20 |
ttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
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| T |
12897643 |
ttctcaccaataattcttttgtaggtgagattcctacaaacctga |
12897687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12930354 - 12930398
Alignment:
| Q |
20 |
ttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
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| T |
12930354 |
ttctcaccaataattcttttgtaggtgagattcctacaaacctga |
12930398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 12946707 - 12946763
Alignment:
| Q |
8 |
tgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
| |
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|||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
12946707 |
tgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaacctga |
12946763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 12956151 - 12956196
Alignment:
| Q |
15 |
actttttctcagcaataattcttttgtaggtgagattcctacaaac |
60 |
Q |
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||||| |||||||||||| |||||||||||||||||||| |||||| |
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| T |
12956151 |
actttctctcagcaataactcttttgtaggtgagattccaacaaac |
12956196 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10609776 - 10609832
Alignment:
| Q |
8 |
tgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctga |
64 |
Q |
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|||| ||||||| ||||| |||||| ||||||| ||| || |||||||||||||||| |
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| T |
10609776 |
tgcaacaactttatctcatcaataactcttttgcaggagaaattcctacaaacctga |
10609832 |
T |
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