View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4479-Insertion-9 (Length: 59)

Name: NF4479-Insertion-9
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4479-Insertion-9
NF4479-Insertion-9
[»] chr3 (26 HSPs)
chr3 (9-56)||(19465345-19465392)
chr3 (8-56)||(14895351-14895399)
chr3 (8-56)||(16678201-16678249)
chr3 (8-56)||(17950826-17950874)
chr3 (12-59)||(19352387-19352434)
chr3 (8-55)||(19394140-19394187)
chr3 (8-56)||(18104337-18104385)
chr3 (8-56)||(18109433-18109481)
chr3 (12-56)||(19381888-19381932)
chr3 (12-52)||(19456292-19456332)
chr3 (8-54)||(25464041-25464087)
chr3 (8-56)||(18017013-18017061)
chr3 (8-56)||(18147821-18147869)
chr3 (8-56)||(19335003-19335051)
chr3 (8-56)||(19425681-19425729)
chr3 (13-56)||(18166152-18166195)
chr3 (12-50)||(19376617-19376655)
chr3 (8-56)||(18116959-18117007)
chr3 (12-56)||(19400724-19400768)
chr3 (8-56)||(19437949-19437997)
chr3 (8-56)||(19462183-19462231)
chr3 (8-56)||(17726498-17726546)
chr3 (8-56)||(18872839-18872887)
chr3 (8-56)||(19027727-19027775)
chr3 (12-56)||(19415179-19415223)
chr3 (25-55)||(17942962-17942992)
[»] chr4 (2 HSPs)
chr4 (8-50)||(2709540-2709582)
chr4 (8-56)||(15536524-15536572)
[»] chr8 (1 HSPs)
chr8 (8-50)||(8460557-8460599)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 3e-19; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-19
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 19465345 - 19465392
Alignment:
Q  9 cagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19465345 cagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 19465392  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 14895399 - 14895351
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14895399 tcagccaatagcttgtccggagaagtgccattggaattgtttcggcttg 14895351  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 16678201 - 16678249
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16678201 tcagccaataacttgtctggagaagtgccattggaattgtttcggcttg 16678249  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-17
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 17950826 - 17950874
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17950826 tcagccaatagcttgtctggaaaagtgccattggaattgtttcggcttg 17950874  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-17
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 19352387 - 19352434
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttcggcttgctc 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  19352387 ccaatagcttgtctggagaagttccattggaattgtttcggcttgctc 19352434  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-17
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 19394140 - 19394187
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggctt 55  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  19394140 tcagccaatagcttgtctggagaagtgccattggaattatttcggctt 19394187  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18104337 - 18104385
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18104337 tcagctaatagcttgtctggtgaagtgccattggaattgtttcggcttg 18104385  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18109433 - 18109481
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18109433 tcagccaatagcttgcctggagaagtgccattggaattgtttctgcttg 18109481  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19381888 - 19381932
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  19381888 ccaatagcttgtctggagaaatgccattggaattgtttcggcttg 19381932  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 19456292 - 19456332
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttcgg 52  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19456292 ccaatagcttgtctggagaagtgccattggaattgtttcgg 19456332  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 25464041 - 25464087
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggct 54  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||    
T  25464041 tcagccaataacttgtctggagaagtgccattggaattggttcggct 25464087  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18017013 - 18017061
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||    
T  18017013 tcagccaatcacttgactggagaagtgccattggaattgtttcggcttg 18017061  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18147821 - 18147869
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  18147821 tcaggcaatagcttgtctggagaattgccattggaattgtttcagcttg 18147869  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 19335003 - 19335051
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||    
T  19335003 tcagccaatcacttgactggagaagtgccattggaattgtttcggcttg 19335051  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 19425681 - 19425729
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  19425681 tcagcaaatagcttgtctggagaagtgcctttggaattgtttaggcttg 19425729  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 18166152 - 18166195
Alignment:
Q  13 caatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  18166152 caatagcttgtctggagaagtaccattggaaatgtttcggcttg 18166195  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 19376617 - 19376655
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttc 50  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19376617 ccaatagcttgtctggagaattgccattggaattgtttc 19376655  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 18116959 - 18117007
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||| |||| |||||||||| |||||||||||||||| ||||||||||    
T  18116959 tcagctaataacttgtctggaaaagtgccattggaattatttcggcttg 18117007  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19400724 - 19400768
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||    
T  19400724 ccaatagcttgtctggggaactgccattggaattgtttcgacttg 19400768  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 19437949 - 19437997
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||| |||| ||||||||||||||||||||||||||| |||| |||||    
T  19437949 tcagcgaataacttgtctggagaagtgccattggaattttttcagcttg 19437997  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 19462183 - 19462231
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||| |||| |||||||||| |||||||||||||||| ||||||||||    
T  19462183 tcagctaataacttgtctggaaaagtgccattggaattatttcggcttg 19462231  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 17726546 - 17726498
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||||||||||||| |||||  ||| |||||| ||||||||||    
T  17726546 tcagccaatagcttgtctggtgaagtaacatcggaattatttcggcttg 17726498  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 18872887 - 18872839
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||  |||| |||||||||||| |||||||||||||| |||||    
T  18872887 tcagccaatcacttgactggagaagtgctattggaattgtttcagcttg 18872839  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 19027775 - 19027727
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||||||||||||| |||||  ||| |||||| ||||||||||    
T  19027775 tcagccaatagcttgtctggtgaagtaacatcggaattatttcggcttg 19027727  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19415179 - 19415223
Alignment:
Q  12 ccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    ||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  19415179 ccaatagcttgtctggagaagtgacattgcaattatttcgacttg 19415223  T

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Target: chr3; HSP #26
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 17942962 - 17942992
Alignment:
Q  25 tggagaagtgccattggaattgtttcggctt 55  Q
    ||||||||| |||||||||||||||||||||    
T  17942962 tggagaagttccattggaattgtttcggctt 17942992  T

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Target: chr4 (Bit Score: 39; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 2709582 - 2709540
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttc 50  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  2709582 tcagccaatagcttgtctggagaagtgccattggaattatttc 2709540  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 15536524 - 15536572
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttcggcttg 56  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  15536524 tcagccaatagcttgtttggggaactgccattggaattgtttcggcttg 15536572  T

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Target: chr8 (Bit Score: 27; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 8460557 - 8460599
Alignment:
Q  8 tcagccaatagcttgtctggagaagtgccattggaattgtttc 50  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||    
T  8460557 tcagctaataacttgtctggagaagtgccgttggaattatttc 8460599  T

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