View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479_high_2 (Length: 334)
Name: NF4479_high_2
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 46842346 - 46842499
Alignment:
| Q |
17 |
cagcaaagaaagagagagtaacatatactactaacataacataaacaattgaacatggtactactttgtagtaaccttagtaaaaactgccattgttgct |
116 |
Q |
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| T |
46842346 |
cagcaaagaaagagagagtaacatatactactaacataacataaacaattgaacatggtactactttgtagtaaccttagtaaaaactgccattgttgct |
46842445 |
T |
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| Q |
117 |
gagatcatggtggtgtggccttattaaaaccactcaatgattcacctgaaacaa |
170 |
Q |
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| T |
46842446 |
gagatcatggtggtgtggccttattaaaaccactcaatgattcacctgaaacaa |
46842499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 46842547 - 46842660
Alignment:
| Q |
217 |
ccaccaattctcaatcattaacacgtagtacaaagtttttataagnnnnnnnnnnnnn----cccaccaaccagttactccaatcacaaaccactttctt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
46842547 |
ccaccaattctcaatcattaacacgtagtacaaagtttttataagaaaaaaaaaaaaaaaaacccaccaaccaattactccaatcacaaaccactttctt |
46842646 |
T |
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| Q |
313 |
ctttctttctctgc |
326 |
Q |
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| T |
46842647 |
ctttctttctctgc |
46842660 |
T |
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