View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479_high_4 (Length: 250)
Name: NF4479_high_4
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 1402015 - 1402084
Alignment:
| Q |
68 |
ggcgactttactagcgtcagggggtgctggacatatttatcctaaaactacgaatccgttggtagttctc |
137 |
Q |
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| T |
1402015 |
ggcgactttactagcgtcagggggtgctggacatatttatcctaaaactacgaatccgttggtagttctc |
1402084 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 1402148 - 1402191
Alignment:
| Q |
201 |
aggtatttaataacacgaatcatgatgaaaaatagaataatcta |
244 |
Q |
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| T |
1402148 |
aggtatttaataacacgaatcatgatgaaaaatagaataatcta |
1402191 |
T |
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