View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4479_high_5 (Length: 239)
Name: NF4479_high_5
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4479_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 1401491 - 1401712
Alignment:
| Q |
18 |
atgggcgcatcgtttgatcatggggaagatggtaacttgcatctagcgagggagggaggtcattcacataacagaatcgttcatgctgctgatatgacag |
117 |
Q |
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| T |
1401491 |
atgggcacatcgtttgatcatggggaagatggtaacttgcatctagcgagggagggaggtcattcacataacagaatcgttcatgctgctgatatgacag |
1401590 |
T |
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| Q |
118 |
gaaaagagattgagcgcgctctattgaaggcagttatcaacaatcctaatatttttgtgtttgaacaccattttgctatagatcttctcacttgtcaggt |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401591 |
gaaaagagattgagcgcgctcttttgaaggcagttatcaacaatcctcatatttttgtgtttgaacaccattttgctatagatcttctcacttgtcaggt |
1401690 |
T |
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| Q |
218 |
atgttctctttttctttccttt |
239 |
Q |
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| T |
1401691 |
atgttctctttttctttccttt |
1401712 |
T |
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