View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4479_low_8 (Length: 238)

Name: NF4479_low_8
Description: NF4479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4479_low_8
NF4479_low_8
[»] chr4 (5 HSPs)
chr4 (104-238)||(4243128-4243262)
chr4 (18-76)||(4243041-4243099)
chr4 (196-228)||(33640988-33641020)
chr4 (196-229)||(6427914-6427947)
chr4 (195-228)||(19304456-19304489)
[»] chr7 (5 HSPs)
chr7 (192-228)||(2012790-2012826)
chr7 (196-228)||(657842-657874)
chr7 (192-228)||(5630073-5630109)
chr7 (196-228)||(28340554-28340586)
chr7 (195-223)||(46609249-46609277)
[»] chr6 (2 HSPs)
chr6 (196-228)||(33500630-33500662)
chr6 (195-228)||(31807984-31808017)
[»] chr5 (6 HSPs)
chr5 (196-236)||(12521446-12521485)
chr5 (195-237)||(14716620-14716661)
chr5 (196-228)||(1550808-1550840)
chr5 (192-228)||(7026411-7026447)
chr5 (197-229)||(12408223-12408255)
chr5 (196-228)||(19535456-19535488)
[»] chr3 (3 HSPs)
chr3 (193-228)||(37273054-37273089)
chr3 (196-238)||(37308214-37308255)
chr3 (188-229)||(12985481-12985522)
[»] chr2 (2 HSPs)
chr2 (197-230)||(5133652-5133685)
chr2 (188-228)||(34764194-34764234)
[»] chr1 (3 HSPs)
chr1 (196-228)||(24967928-24967960)
chr1 (200-228)||(47598564-47598592)
chr1 (197-229)||(48282013-48282045)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 4243128 - 4243262
Alignment:
Q  104 gcttactgtaaatattcttttatattcaactgtaaagaatgaatttcaaggtgaagtaatgcaaacaactttgatcgatgatgattatggctctgtttgg 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243128 gcttactgtaaatattcttttatattcaactgtaaagtatgaatttcaaggtgaagtaatgcaaacaactttgatcgatgatgattatggctctgtttgg 4243227  T
Q  204 ataaacagcttaattaagtgcttattagcataagc 238  Q
    |||||||||||||||||||||||||||||||||||    
T  4243228 ataaacagcttaattaagtgcttattagcataagc 4243262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 4243041 - 4243099
Alignment:
Q  18 ttctgaagctcacattaatcttcaaagaatactccgatcatgccctaaagtacgaactc 76  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4243041 ttctgaagctcacactaatcttcaaagaatactccgatcatgccctaaagtacgaactc 4243099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 33640988 - 33641020
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||||||||||||||||||||||    
T  33640988 ctgtttggataaacagcttaattaagtgcttat 33641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 6427914 - 6427947
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttatt 229  Q
    ||||||||||||||| ||||||||||||||||||    
T  6427914 ctgtttggataaacaacttaattaagtgcttatt 6427947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 19304456 - 19304489
Alignment:
Q  195 tctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||||| ||||||||||||||||    
T  19304456 tctgtttggataaacagattaattaagtgcttat 19304489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 2012826 - 2012790
Alignment:
Q  192 ggctctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2012826 ggctctgtttggataaaaagcttaattaagtgcttat 2012790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 657874 - 657842
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||| |||||||||||||||||    
T  657874 ctgtttggataaacaacttaattaagtgcttat 657842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 5630109 - 5630073
Alignment:
Q  192 ggctctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  5630109 ggctctgtttggataaacaacttaattaagtccttat 5630073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 28340586 - 28340554
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||| |||||||||||||||||||||    
T  28340586 ctgtttggatatacagcttaattaagtgcttat 28340554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 46609277 - 46609249
Alignment:
Q  195 tctgtttggataaacagcttaattaagtg 223  Q
    |||||||||||||||||||||||||||||    
T  46609277 tctgtttggataaacagcttaattaagtg 46609249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 33500662 - 33500630
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||||||||||||||||||||||    
T  33500662 ctgtttggataaacagcttaattaagtgcttat 33500630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 31808017 - 31807984
Alignment:
Q  195 tctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||||| |||||||||||||||||    
T  31808017 tctgtttggataaacaacttaattaagtgcttat 31807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 12521446 - 12521485
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttattagcataa 236  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  12521446 ctgtttggataaacagcttaattaagtgctt-ttagcataa 12521485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 14716661 - 14716620
Alignment:
Q  195 tctgtttggataaacagcttaattaagtgcttattagcataag 237  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  14716661 tctgtttggatatacagcttaattaagtgctta-tagcataag 14716620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 1550808 - 1550840
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||| |||||||||||||||||    
T  1550808 ctgtttggataaacaacttaattaagtgcttat 1550840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 7026447 - 7026411
Alignment:
Q  192 ggctctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||| |||||||||||| |||||||||||||||||    
T  7026447 ggctctatttggataaacaacttaattaagtgcttat 7026411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 12408223 - 12408255
Alignment:
Q  197 tgtttggataaacagcttaattaagtgcttatt 229  Q
    ||||||||||||||| |||||||||||||||||    
T  12408223 tgtttggataaacagtttaattaagtgcttatt 12408255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 19535456 - 19535488
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||| ||||||||||||||||||    
T  19535456 ctgtttggataaacggcttaattaagtgcttat 19535488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 37273054 - 37273089
Alignment:
Q  193 gctctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37273054 gctctgtttggataagcagcttaattaagtgcttat 37273089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 37308255 - 37308214
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttattagcataagc 238  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  37308255 ctgtttggataaacaacttaattaagtgctta-tagcataagc 37308214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 12985522 - 12985481
Alignment:
Q  188 ttatggctctgtttggataaacagcttaattaagtgcttatt 229  Q
    |||||| ||||||||||||||||| ||||||||||| |||||    
T  12985522 ttatggttctgtttggataaacagattaattaagtgtttatt 12985481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 5133652 - 5133685
Alignment:
Q  197 tgtttggataaacagcttaattaagtgcttatta 230  Q
    ||||||||||||||||||||||||||| ||||||    
T  5133652 tgtttggataaacagcttaattaagtgtttatta 5133685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 34764194 - 34764234
Alignment:
Q  188 ttatggctctgtttggataaacagcttaattaagtgcttat 228  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  34764194 ttatgactatgtttggataaacagcttaattatgtgcttat 34764234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 24967928 - 24967960
Alignment:
Q  196 ctgtttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||| ||||||||||||||||||    
T  24967928 ctgtttggataaacggcttaattaagtgcttat 24967960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 47598592 - 47598564
Alignment:
Q  200 ttggataaacagcttaattaagtgcttat 228  Q
    |||||||||||||||||||||||||||||    
T  47598592 ttggataaacagcttaattaagtgcttat 47598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 48282013 - 48282045
Alignment:
Q  197 tgtttggataaacagcttaattaagtgcttatt 229  Q
    |||||||||||| ||||||||||||||||||||    
T  48282013 tgtttggataaaaagcttaattaagtgcttatt 48282045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University