View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4480-Insertion-1 (Length: 610)
Name: NF4480-Insertion-1
Description: NF4480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4480-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 7375705 - 7375290
Alignment:
| Q |
8 |
atcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375705 |
atcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
7375606 |
T |
|
| Q |
108 |
caccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatc |
207 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7375605 |
cactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatc |
7375506 |
T |
|
| Q |
208 |
cttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatccacac |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |||| |
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| T |
7375505 |
cttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacac |
7375406 |
T |
|
| Q |
287 |
tttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgctctcctcattccccaa |
386 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7375405 |
tttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgttctcctcattccccaa |
7375306 |
T |
|
| Q |
387 |
agcttcaaatttttca |
402 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7375305 |
agcttcaaatttttca |
7375290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 7278134 - 7278549
Alignment:
| Q |
8 |
atcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7278134 |
atcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagctgctc |
7278233 |
T |
|
| Q |
108 |
caccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatc |
207 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
7278234 |
cactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatc |
7278333 |
T |
|
| Q |
208 |
cttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatccacac |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |||| |
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| T |
7278334 |
cttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacac |
7278433 |
T |
|
| Q |
287 |
tttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgctctcctcattccccaa |
386 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7278434 |
tttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgttctcctcattccccaa |
7278533 |
T |
|
| Q |
387 |
agcttcaaatttttca |
402 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7278534 |
agcttcaaatttttca |
7278549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 461 - 610
Target Start/End: Original strand, 7278608 - 7278760
Alignment:
| Q |
461 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctc |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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|
| T |
7278608 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7278707 |
T |
|
| Q |
558 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccc |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7278708 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccc |
7278760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 461 - 610
Target Start/End: Complemental strand, 7375231 - 7375079
Alignment:
| Q |
461 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctc |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |
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|
| T |
7375231 |
ataaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctc |
7375132 |
T |
|
| Q |
558 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7375131 |
attcatcaaaggtcccattttttcacctccctcattcttctcttcataccccc |
7375079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 609
Target Start/End: Original strand, 7278789 - 7278849
Alignment:
| Q |
549 |
accatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcacacccc |
609 |
Q |
| |
|
|||||||||||||| ||||| | | ||||| | ||| |||||||||| ||||||||||||| |
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|
| T |
7278789 |
accatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
7278849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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