View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4480-Insertion-3 (Length: 561)

Name: NF4480-Insertion-3
Description: NF4480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4480-Insertion-3
NF4480-Insertion-3
[»] chr2 (4 HSPs)
chr2 (15-252)||(34996830-34997067)
chr2 (267-561)||(33458300-33458593)
chr2 (271-561)||(34478879-34479169)
chr2 (265-322)||(21472734-21472791)
[»] scaffold0101 (1 HSPs)
scaffold0101 (265-561)||(18614-18909)
[»] chr1 (6 HSPs)
chr1 (271-561)||(52004778-52005067)
chr1 (265-503)||(20010720-20010959)
chr1 (338-561)||(52539277-52539500)
chr1 (265-503)||(42872597-42872837)
chr1 (265-316)||(52539225-52539276)
chr1 (85-144)||(36430269-36430328)
[»] chr8 (4 HSPs)
chr8 (272-561)||(38566505-38566793)
chr8 (197-240)||(13987342-13987385)
chr8 (197-234)||(28009232-28009269)
chr8 (197-234)||(28066535-28066572)
[»] chr4 (13 HSPs)
chr4 (271-561)||(7199135-7199424)
chr4 (265-561)||(51470013-51470307)
chr4 (271-561)||(55681913-55682202)
chr4 (271-561)||(37517406-37517684)
chr4 (271-561)||(37521622-37521900)
chr4 (374-561)||(41055418-41055603)
chr4 (343-530)||(374918-375106)
chr4 (267-369)||(20790139-20790242)
chr4 (395-530)||(48236179-48236315)
chr4 (365-529)||(49811658-49811822)
chr4 (265-316)||(375112-375163)
chr4 (197-252)||(42451838-42451893)
chr4 (271-310)||(42491062-42491101)
[»] chr3 (6 HSPs)
chr3 (272-561)||(39759284-39759572)
chr3 (271-561)||(43823415-43823703)
chr3 (271-367)||(43067921-43068019)
chr3 (395-499)||(53286409-53286511)
chr3 (267-322)||(53286553-53286608)
chr3 (80-144)||(25375231-25375296)
[»] chr5 (5 HSPs)
chr5 (271-561)||(37369578-37369868)
chr5 (326-561)||(41992268-41992502)
chr5 (267-316)||(41992231-41992280)
chr5 (180-229)||(14627737-14627786)
chr5 (318-369)||(41020425-41020477)
[»] chr6 (3 HSPs)
chr6 (271-561)||(3288426-3288705)
chr6 (395-499)||(11843252-11843354)
chr6 (190-252)||(35108290-35108352)
[»] chr7 (7 HSPs)
chr7 (275-534)||(33516389-33516638)
chr7 (346-561)||(11591420-11591632)
chr7 (370-561)||(46067137-46067326)
chr7 (404-561)||(43613823-43613978)
chr7 (338-530)||(48826750-48826941)
chr7 (275-323)||(11591362-11591410)
chr7 (270-322)||(48826702-48826754)
[»] scaffold0699 (1 HSPs)
scaffold0699 (355-503)||(19-167)
[»] scaffold0368 (1 HSPs)
scaffold0368 (265-503)||(7752-7992)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 34996830 - 34997067
Alignment:
Q  15 ggtcagcttattctttctaaattgatattttttataatttatacgggtacagatttaattgttgtgtgtgaggtaaattttcctgtgttatgagaaaaat 114  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34996830 ggtcagcttattctttctaaattgatattttttataacttatacggctacagatttaattgttgtgtgtgaggtaaattttcctgtgttatgagaaaaat 34996929  T
Q  115 taggaaagtaagcgtgtgtaatactgatggtttgggctaagtggacggacatataaaagaaataaagaaaattcttcttcatccatcaaaaattgctcac 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||    
T  34996930 taggaaagtaagtgtgtgtaatactgatggtttgggctaagtggacggacatataaaagaaataaagagaattcctcttcatccatcaaaaattgctgac 34997029  T
Q  215 ttccaaccaaactttcaaaactactcatgtgtgactta 252  Q
    |||||||||||||||||||| |||||||||||||||||    
T  34997030 ttccaaccaaactttcaaaaatactcatgtgtgactta 34997067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 267 - 561
Target Start/End: Complemental strand, 33458593 - 33458300
Alignment:
Q  267 cagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgac 365  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||    
T  33458593 cagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaac 33458494  T
Q  366 cctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaa 465  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||| |||||| ||||||||||||||| ||||    
T  33458493 cctgtgtaaaatactagatttcccttcatttaaaaccgttttgagggtcatttttgtaattttcaaaaccctgactattactcttctccaccagaaccaa 33458394  T
Q  466 atacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||| ||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  33458393 atacacagccacaaactcaacttcttcatcgtatcaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 33458300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 34479169 - 34478879
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    |||||||||||||||||||  |||||||||||||||| | |||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||    
T  34479169 gctccaacgcggagcgtttggagaaagcggatgaagcagacgcaattgcgggcaaaagcgggagcgatgcgggtcaaagcgggcacttttgacaaccctg 34479070  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||| ||  |||||||    
T  34479069 tgtaaaatattagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctacctattactcttctccaccggaatcaaatac 34478970  T
Q  470 acagccacaaactcaacttcttcatcgtaccaac-nnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||| |||||||||||||||||||||| |||||||         ||||| ||||| ||||||||||  | ||||||||||||||||||||||||    
T  34478969 acatccacaaactcaacttcttcatcttaccaacaaaaaaaaatccatttcctcgtctcatcatc--tcagaacccatctttgttctcctctc 34478879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 21472734 - 21472791
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcggg 322  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||| ||| ||||||||    
T  21472734 cgcagcgctccaaggcggagcgtttggagaaagcggctgaagcggtcgcgattgcggg 21472791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 265 - 561
Target Start/End: Original strand, 18614 - 18909
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacg 363  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||     
T  18614 cgcagcgctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcatttgaca 18713  T
Q  364 accctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagcc 463  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||    
T  18714 accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc 18813  T
Q  464 aaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  18814 aaatacacagccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcttctcatcatc--tcagaacccatctttgttctcctctc 18909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 52005067 - 52004778
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  52005067 gctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctg 52004968  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  52004967 tgtaaaatactagattttccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac 52004868  T
Q  470 acagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  52004867 acagccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 52004778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 265 - 503
Target Start/End: Complemental strand, 20010959 - 20010720
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacg 363  Q
    |||||||||||||| |||||| |||  |||||||| ||||||||||||||||||| |||||||||||||| || |||| ||||||||||| ||||||||     
T  20010959 cgcagcgctccaacacggagcatttggagaaagcgtatgaagcgggcgcaattgcaggcaaaagcgggcgtgatgcgggtcaaagcgggcgcttttgaca 20010860  T
Q  364 accctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagcc 463  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  20010859 accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagagcc 20010760  T
Q  464 aaatacacagccacaaactcaacttcttcatcgtaccaac 503  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20010759 aaatacacagccacaaactcaacttcttcatcgtaccaac 20010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 338 - 561
Target Start/End: Original strand, 52539277 - 52539500
Alignment:
Q  338 gcggatcaaagcgggcacttttgacgaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccct 437  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  52539277 gcgggtcaaagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccct 52539376  T
Q  438 aactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaac--nnnnnnnntccatctcctcttctcatcatcta 535  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||      
T  52539377 aactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtaccaacaaaaaaaaataccatctcctcttctcatcatc-- 52539474  T
Q  536 taagaacccatctttgttctcctctc 561  Q
    | ||||||||||||||||||||||||    
T  52539475 tcagaacccatctttgttctcctctc 52539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 265 - 503
Target Start/End: Complemental strand, 42872837 - 42872597
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcga-gcggatcaaagcgggcacttttgac 362  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||| |||||| |||| | ||||||||| ||| | || ||||||||||||||||| ||    
T  42872837 cgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcgggcactttttac 42872738  T
Q  363 gaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagc 462  Q
     ||||||||||||||||  ||||| |||||  |||||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||||||| |||| |    
T  42872737 aaccctgtgtaaaatacaggatttcccttcacttaaaaccattttaagggtcttttttgtaattttcaaaaccctaactattactcttctccatcagaac 42872638  T
Q  463 caaatacacagccacaaactcaacttcttcatcgtaccaac 503  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  42872637 caaatacacagccgcaaacacaacttcttcatcgtaccaac 42872597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 52539225 - 52539276
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaat 316  Q
    ||||||||| |||||||||||||||  |||||||||||||| ||||||||||    
T  52539225 cgcagcgctgcaacgcggagcgtttggagaaagcggatgaaacgggcgcaat 52539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 36430269 - 36430328
Alignment:
Q  85 aggtaaattttcctgtgttatgagaaaaattaggaaagtaagcgtgtgtaatactgatgg 144  Q
    ||||||||||| ||||||| |||||||||| |||| || | | |||||||||||||||||    
T  36430269 aggtaaattttactgtgttttgagaaaaatcaggagagaaggtgtgtgtaatactgatgg 36430328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 272 - 561
Target Start/End: Original strand, 38566505 - 38566793
Alignment:
Q  272 ctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctgt 370  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||  |||||||    
T  38566505 ctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgancaccctgt 38566604  T
Q  371 gtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaataca 470  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  38566605 gtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaataca 38566704  T
Q  471 cagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||| |||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  38566705 cagccacaaactcaacttcttcaccgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 38566793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 13987342 - 13987385
Alignment:
Q  197 ccatcaaaaattgctcacttccaaccaaactttcaaaactactc 240  Q
    |||||||||||||||||||||||||||||||||| ||| |||||    
T  13987342 ccatcaaaaattgctcacttccaaccaaactttccaaaatactc 13987385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 28009269 - 28009232
Alignment:
Q  197 ccatcaaaaattgctcacttccaaccaaactttcaaaa 234  Q
    |||||||||||||||| || ||||||||||||||||||    
T  28009269 ccatcaaaaattgctcgctcccaaccaaactttcaaaa 28009232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 28066572 - 28066535
Alignment:
Q  197 ccatcaaaaattgctcacttccaaccaaactttcaaaa 234  Q
    |||||||||||||||| || ||||||||||||||||||    
T  28066572 ccatcaaaaattgctcgctcccaaccaaactttcaaaa 28066535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 271 - 561
Target Start/End: Original strand, 7199135 - 7199424
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||| ||||||    
T  7199135 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggtgcttttgacaaccctg 7199234  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||| ||||||||    
T  7199235 tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctcctccagaaccaaatac 7199334  T
Q  470 acagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  7199335 acagccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 7199424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 265 - 561
Target Start/End: Complemental strand, 51470307 - 51470013
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacg 363  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||| ||||||||     
T  51470307 cgcagcgctccaacacggagcgtttggagaaagcggatgaagcgggcacaattgcgggcaaaagcgggcgcgatgtgggtcaaagcgggcgcttttgaca 51470208  T
Q  364 accctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagcc 463  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||    
T  51470207 accctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaacc 51470108  T
Q  464 aaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  51470107 aaatacacagccacaaactcaacttcttcatcttaccaa-aaaaaaaatccatctcctcttctcatcatc--tcagaacccatctttgttctcctctc 51470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 271 - 561
Target Start/End: Original strand, 55681913 - 55682202
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||||||||| || | ||||||||||| |||||||| ||||||    
T  55681913 gctccaacgcggagcgtttggagaaagcggatgaagcgggtgcaattgcggacaaaagcgggcgcgatgcaggtcaaagcgggcgcttttgacaaccctg 55682012  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  55682013 tgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac 55682112  T
Q  470 acagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||  ||||||||||  | ||||||||||||||||||||||||    
T  55682113 acagccacaaactcaacttcttcatcgtaccaacaaaacaaatccatctccttgtctcatcatc--tcagaacccatctttgttctcctctc 55682202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 37517684 - 37517406
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgagcggatcaaagcgggcacttttgacgaccctgt 370  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||| |||||||    
T  37517684 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgat---------gcgggcgcttttgacaaccctgt 37517594  T
Q  371 gtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaataca 470  Q
    ||||||||||| |||| ||||  |||||||| ||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||| |||||||||||    
T  37517593 gtaaaatactaaatttcccttaatttaaaactgttttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagccaaataca 37517495  T
Q  471 cagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  37517494 cagccacaaactcaacttcttcatcgtaccaacaaaataaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 37517406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 37521900 - 37521622
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgagcggatcaaagcgggcacttttgacgaccctgt 370  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||| |||||||    
T  37521900 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgat---------gcgggcgcttttgacaaccctgt 37521810  T
Q  371 gtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaataca 470  Q
    ||||||||||| |||| ||||  |||||||| ||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||| |||||||||||    
T  37521809 gtaaaatactaaatttcccttaatttaaaactgttttaagggtcatttttgtaatttt-aaaaccctaactattactcttctccaccatagccaaataca 37521711  T
Q  471 cagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  37521710 cagccacaaactcaacttcttcatcgtaccaacaaaataaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 37521622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 374 - 561
Target Start/End: Complemental strand, 41055603 - 41055418
Alignment:
Q  374 aaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacag 473  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41055603 aaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacag 41055504  T
Q  474 ccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  41055503 ccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 41055418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 343 - 530
Target Start/End: Complemental strand, 375106 - 374918
Alignment:
Q  343 tcaaagcgggcacttttgacgaccctgtgtaaaatactagattttccttcct-ttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaact 441  Q
    ||||||||| | ||||| || |||||||||||||||| ||||||||||| |  ||||||||||||||||||||| ||| |||| |||||||||| |||||    
T  375106 tcaaagcggacgctttttacaaccctgtgtaaaatacaagattttcctttcacttaaaaccgttttaagggtcaattttgtaattttcaaaaccataact 375007  T
Q  442 atttctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatc 530  Q
    ||| |||||||| | || | |||||||||||||| ||||| |||||||||||||||||||||        |||||||||||||||||||    
T  375006 attactcttctctatcataaccaaatacacagcctcaaacacaacttcttcatcgtaccaacaaaaaaaatccatctcctcttctcatc 374918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 20790139 - 20790242
Alignment:
Q  267 cagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgac 365  Q
    |||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| ||    
T  20790139 cagcgctctaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcggacgcgatgcgggtcaaagcgggcgcttttgacaac 20790238  T
Q  366 cctg 369  Q
    ||||    
T  20790239 cctg 20790242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 395 - 530
Target Start/End: Original strand, 48236179 - 48236315
Alignment:
Q  395 ttaaaaccgttttaagggtcattttc-gtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttca 493  Q
    ||||| |||||||||||||||||||  |||| ||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||| |||||||||||    
T  48236179 ttaaacccgttttaagggtcattttttgtaattttcaaaaccctaactattactcttctccatcagaaccaaatacacagccgcaaacacaacttcttca 48236278  T
Q  494 tcgtaccaacnnnnnnnntccatctcctcttctcatc 530  Q
    || ||| |||        |||||||||||||||||||    
T  48236279 tcatacaaacaaaaaaaatccatctcctcttctcatc 48236315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 365 - 529
Target Start/End: Original strand, 49811658 - 49811822
Alignment:
Q  365 ccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtca-ttttcgtaactttcaaaaccctaactatttctcttctccaccagagcc 463  Q
    ||||||||||||||| |||||  |||||  ||||||||||||||||||||| |||| |||| |||||||||  |||||| | |||||||||| |||| ||    
T  49811658 ccctgtgtaaaatacaagattgcccttcacttaaaaccgttttaagggtcattttttgtaattttcaaaacgttaacta-tactcttctccatcagaacc 49811756  T
Q  464 aaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcat 529  Q
    ||||||||| |  ||||  ||||||||||||||||| |||        ||||||||||||||||||    
T  49811757 aaatacacaactgcaaaaacaacttcttcatcgtacaaacaaaaaaaatccatctcctcttctcat 49811822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 375163 - 375112
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaat 316  Q
    |||| ||||||||||||||||||||   |||||||| |||||||||||||||    
T  375163 cgcaacgctccaacgcggagcgtttggcgaaagcggctgaagcgggcgcaat 375112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 42451838 - 42451893
Alignment:
Q  197 ccatcaaaaattgctcacttccaaccaaactttcaaaactactcatgtgtgactta 252  Q
    |||| ||||||||||  || |||||||||||||| ||| |||||||||||||||||    
T  42451838 ccataaaaaattgcttgctcccaaccaaactttcgaaaatactcatgtgtgactta 42451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 42491062 - 42491101
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcggg 310  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  42491062 gctccaacgcggagcgtttggagaaagcggatgaagcggg 42491101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 272 - 561
Target Start/End: Original strand, 39759284 - 39759572
Alignment:
Q  272 ctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctgt 370  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||    
T  39759284 ctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcaatgcgggtcaaagtgggcgcttttgacaaccctgt 39759383  T
Q  371 gtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaataca 470  Q
    || ||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  39759384 gtgaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaataca 39759483  T
Q  471 cagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  39759484 cagccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 39759572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 43823703 - 43823415
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  43823703 gctccaacgcggagcatttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctg 43823604  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    |||||| |||||||||| ||||| |||||| |||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  43823603 tgtaaattactagatttcccttcatttaaacccgttttaagggtcgtttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac 43823504  T
Q  470 acagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||| |||||||        ||||||||||| ||||||||||  | || |||||||||||||||||||||    
T  43823503 acagccacaaactcaacttcttcatcataccaacaaaaaaaatccatctcctcgtctcatcatc--tcag-acccatctttgttctcctctc 43823415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 367
Target Start/End: Original strand, 43067921 - 43068019
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgc-gggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccc 367  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||| ||||    
T  43067921 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcggggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccc 43068019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 395 - 499
Target Start/End: Complemental strand, 53286511 - 53286409
Alignment:
Q  395 ttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcat 494  Q
    ||||||||||||| |||  |||||| |||| |||||||||| |||||||| |||||||||| |||| |||||||||||||  ||||| ||||||||||||    
T  53286511 ttaaaaccgtttttaggc-catttttgtaattttcaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacgcaacttcttcat 53286414  T
Q  495 cgtac 499  Q
    |||||    
T  53286413 cgtac 53286409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 53286608 - 53286553
Alignment:
Q  267 cagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcggg 322  Q
    ||||||||||| |||||||||||  ||||||||| |||||||||||| ||||||||    
T  53286608 cagcgctccaaggcggagcgtttggagaaagcggctgaagcgggcgccattgcggg 53286553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 25375231 - 25375296
Alignment:
Q  80 gtgtgaggtaaattttcctgtgtt-atgagaaaaattaggaaagtaagcgtgtgtaatactgatgg 144  Q
    |||||||||||| |||| |||||| |||| ||||||  |||||| ||| |||||||||||||||||    
T  25375231 gtgtgaggtaaaatttcatgtgtttatgaaaaaaatctggaaagaaagtgtgtgtaatactgatgg 25375296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 37369868 - 37369578
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||    
T  37369868 gctccaacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgatgcgggtcaaagcgggcgcttttgacaaccctg 37369769  T
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||||||||||| ||||  |||||||| ||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  37369768 tgtaaaatactagatttcccttaatttaaaactgttttaacggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac 37369669  T
Q  470 acagccacaaactcaacttcttcatcgtaccaac-nnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||  | |||| |||||||||||||||||||    
T  37369668 acagccacaaactcaacttcttcatcgtaccaacaaaaaaaattccatctcctcgtctcatcatc--tcagaatccatctttgttctcctctc 37369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 326 - 561
Target Start/End: Original strand, 41992268 - 41992502
Alignment:
Q  326 aagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaa 424  Q
    |||||||||| | |||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  41992268 aagcgggcgcaatgcgggtcaaagcgggcgcttttgacaaccatgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaa 41992367  T
Q  425 ctttcaaaaccctaactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctctt 524  Q
     ||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||        |||||||||||||    
T  41992368 ttttcaaaaccctaactattactcttctccaccataaccaaatacacagccacaaactcaacttcttcatcataccaacaaaaaaaatccatctcctctt 41992467  T
Q  525 ctcatcatctataagaacccatctttgttctcctctc 561  Q
    ||||| |||  | | ||||||||||||||||||||||    
T  41992468 ctcattatc--tcataacccatctttgttctcctctc 41992502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 41992231 - 41992280
Alignment:
Q  267 cagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaat 316  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  41992231 cagcgctccaacgcggagtgtttggagaaagcggatgaagcgggcgcaat 41992280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 14627737 - 14627786
Alignment:
Q  180 agaaaattcttcttcatccatcaaaaattgctcacttccaaccaaacttt 229  Q
    |||||||| || ||| |||||||||||||| ||||| |||||||||||||    
T  14627737 agaaaattgtttttcttccatcaaaaattggtcactcccaaccaaacttt 14627786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 41020477 - 41020425
Alignment:
Q  318 gcgggcaaaagcgggcgcga-gcggatcaaagcgggcacttttgacgaccctg 369  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||| ||||||    
T  41020477 gcgggcaaaagcgggtgcgatgcgggtcaaagcgggcgcttttgacaaccctg 41020425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 271 - 561
Target Start/End: Complemental strand, 3288705 - 3288426
Alignment:
Q  271 gctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgagcggatcaaagcgggcacttttgacgaccctgt 370  Q
    ||||||||||   ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||          |||||| |||||||| |||||||    
T  3288705 gctccaacgctccgcgtttggagaaagcggatgaagcgggcgcaattgtgggcaaaagcgggcgcgat---------gcgggcgcttttgacaaccctgt 3288615  T
Q  371 gtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaataca 470  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  3288614 gtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaataca 3288515  T
Q  471 cagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  3288514 cagccacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 3288426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 499
Target Start/End: Original strand, 11843252 - 11843354
Alignment:
Q  395 ttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcat 494  Q
    ||||||||||||| |||  |||||| |||| ||| |||||| |||||||| |||||||||| |||| |||||||||||||  ||||| ||||||||||||    
T  11843252 ttaaaaccgtttttaggc-catttttgtaatttttaaaacc-taactattactcttctccatcagaaccaaatacacagctgcaaacacaacttcttcat 11843349  T
Q  495 cgtac 499  Q
    |||||    
T  11843350 cgtac 11843354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 35108290 - 35108352
Alignment:
Q  190 tcttcatccatcaaaaattgctcacttccaaccaaactttcaaaactactcatgtgtgactta 252  Q
    ||||| ||||||||||||||||| |||||||||||||||   ||| |||||||| ||||||||    
T  35108290 tcttcttccatcaaaaattgctcgcttccaaccaaacttctgaaaatactcatgcgtgactta 35108352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 275 - 534
Target Start/End: Complemental strand, 33516638 - 33516389
Alignment:
Q  275 caacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggcaaaagcgggcgcgagcggatcaaagcgggcacttttgacgaccctgtgtaa 374  Q
    |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||          ||||||||||| |||||  | |||||||||||    
T  33516638 caacgcggagcgtttggagaaagcggatgaagcaggcgcaattgcgggcaaaagcggg----------tcaaagcgggcgcttttagcaaccctgtgtaa 33516549  T
Q  375 aatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacagc 474  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  33516548 aatactagatttcccttcatttaaaaccgttttaagggtcattttggtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagc 33516449  T
Q  475 cacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatct 534  Q
    |||||||||||||||||||||||||||||        ||||||||||| |||||||||||    
T  33516448 cacaaactcaacttcttcatcgtaccaacaaaaaaaatccatctcctcgtctcatcatct 33516389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 346 - 561
Target Start/End: Original strand, 11591420 - 11591632
Alignment:
Q  346 aagcgggcacttttgacgaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactattt 445  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||     
T  11591420 aagcgggcgcttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccgttttaagggtcatttttgtaatttttaaaaccctaactatta 11591519  T
Q  446 ctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaaccca 545  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||| |||| |||||        | ||||||||| ||||||||||  | ||||||||    
T  11591520 ctcttctcca-cagaaccaaatacacagccacagactcaacttcttcttcgttccaacaaaaaaaattcatctcctcgtctcatcatc--tcagaaccca 11591616  T
Q  546 tctttgttctcctctc 561  Q
    ||||||||||||||||    
T  11591617 tctttgttctcctctc 11591632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 370 - 561
Target Start/End: Complemental strand, 46067326 - 46067137
Alignment:
Q  370 tgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatac 469  Q
    ||||||||||||||||| || || ||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  46067326 tgtaaaatactagatttcccatcatttaaaaccgttttaagtgtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatac 46067227  T
Q  470 acagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
    |||||||||||||||||||||||||| || ||||        ||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  46067226 acagccacaaactcaacttcttcatcttatcaacaaaaaaaatccatctcctcgtctcatcatc--tcagaacccatctttgttctcctctc 46067137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 404 - 561
Target Start/End: Original strand, 43613823 - 43613978
Alignment:
Q  404 ttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaac 503  Q
    |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43613823 ttttaagggtcatttttgtaattttcaaaaccctaactattactcttctccaccagaaccaaatacacagccacaaactcaacttcttcatcgtaccaac 43613922  T
Q  504 nnnnnnnntccatctcctcttctcatcatctataagaacccatctttgttctcctctc 561  Q
            ||||||||||| ||||||||||  | |||| |||||||||||||||||||    
T  43613923 aaaaaaaatccatctcctcgtctcatcatc--tcagaatccatctttgttctcctctc 43613978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 338 - 530
Target Start/End: Original strand, 48826750 - 48826941
Alignment:
Q  338 gcggatcaaagcgggcacttttgacgaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccct 437  Q
    |||| ||||||||||  ||||| ||  |||| ||||||||||  || |  |||||  ||||||||||||||| | ||||||| |||| ||||||||||||    
T  48826750 gcgggtcaaagcgggtgctttttactcccctatgtaaaatacgggactgcccttcacttaaaaccgttttaaag-tcatttttgtaattttcaaaaccct 48826848  T
Q  438 aactatttctcttctccaccagagccaaatacacagccacaaactcaacttcttcatcgtaccaacnnnnnnnntccatctcctcttctcatc 530  Q
    ||||||| |||||||||| |||| |||||||||||||| ||||  ||||||||||||||||| |||        |||||||||||||||||||    
T  48826849 aactattactcttctccatcagaaccaaatacacagccgcaaatacaacttcttcatcgtacaaacaacaaaaatccatctcctcttctcatc 48826941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 11591362 - 11591410
Alignment:
Q  275 caacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggc 323  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  11591362 caacgcggagcgtttggagaaagcggatgaagcgggcgcaattgcgggc 11591410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 48826702 - 48826754
Alignment:
Q  270 cgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcggg 322  Q
    |||||||| |||||||||||  ||||||||| |||||||||||||||||||||    
T  48826702 cgctccaaggcggagcgtttggagaaagcggctgaagcgggcgcaattgcggg 48826754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 355 - 503
Target Start/End: Complemental strand, 167 - 19
Alignment:
Q  355 cttttgacgaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctcc 454  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  167 cttttgacaaccctgtgtaaaatactagatttcccttcatttaaaaccattttaagggtcatttttgtaattttcaaaaccctaactattactcttctcc 68  T
Q  455 accagagccaaatacacagccacaaactcaacttcttcatcgtaccaac 503  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  67 accagaaccaaatacacagccacaaactcaacttcttcatcgtaccaac 19  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 265 - 503
Target Start/End: Original strand, 7752 - 7992
Alignment:
Q  265 cgcagcgctccaacgcggagcgtttaaagaaagcggatgaagcgggcgcaattgcgggca-aaagcgggcgcga-gcggatcaaagcgggcacttttgac 362  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||| |||||| |||| | ||||||||| ||| | || ||||||||||||||||| ||    
T  7752 cgcagcgctccaacgcggagcgtttggagaaagcggctgaagcgggtgcaattacgggtataaagcgggcacgatgtgggtcaaagcgggcactttttac 7851  T
Q  363 gaccctgtgtaaaatactagattttccttcctttaaaaccgttttaagggtcattttcgtaactttcaaaaccctaactatttctcttctccaccagagc 462  Q
     ||||||||||||||||  ||||| |||||  |||||||| ||| | || || |||| |||| ||||||||||||||||||| |||||||||| |||| |    
T  7852 aaccctgtgtaaaatacaggatttcccttcacttaaaaccatttaagggttcttttttgtaattttcaaaaccctaactattactcttctccatcagaac 7951  T
Q  463 caaatacacagccacaaactcaacttcttcatcgtaccaac 503  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  7952 caaatacacagccgcaaacacaacttcttcatcgtaccaac 7992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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