View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4480-Insertion-7 (Length: 167)

Name: NF4480-Insertion-7
Description: NF4480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4480-Insertion-7
NF4480-Insertion-7
[»] chr4 (2 HSPs)
chr4 (11-167)||(24219049-24219205)
chr4 (14-167)||(16844317-16844473)
[»] chr5 (15 HSPs)
chr5 (14-162)||(37394207-37394358)
chr5 (14-167)||(37402319-37402475)
chr5 (14-167)||(37531783-37531939)
chr5 (14-167)||(37592887-37593043)
chr5 (14-167)||(37695278-37695434)
chr5 (11-154)||(37383644-37383787)
chr5 (7-121)||(37701418-37701535)
chr5 (14-162)||(37638434-37638585)
chr5 (11-167)||(37427736-37427892)
chr5 (14-162)||(37822592-37822743)
chr5 (14-135)||(37434425-37434549)
chr5 (14-167)||(37710190-37710346)
chr5 (11-64)||(37439859-37439912)
chr5 (20-60)||(41714185-41714225)
chr5 (20-60)||(42117117-42117157)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 5e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 5e-79
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 24219049 - 24219205
Alignment:
Q  11 gaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttcactgggaaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24219049 gaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatatagtgtgttcttcactgggaaac 24219148  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24219149 ctcaatggcttgcaagacatgttgaaagcatatttagcataagattgaaaaggacaa 24219205  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 16844317 - 16844473
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttct---tcactgggaaac 110  Q
    ||||| ||||||||||||||||| ||| |||| ||||||| |||||| ||| || | ||  | ||||||||||||||||| ||||   ||||||| ||||    
T  16844317 gaatcaggatttggctggaaagcggtaacaatcggatatgcatgtggtgcaatattcgggttgctcttgggatataatgtattcttcttcactggaaaac 16844416  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    | ||||| |||||||||| ||||||| | || |||| ||||||||||||||| ||||    
T  16844417 cccaatgccttgcaagacatgttgaacgtatgtttaacataagattgaaaagaacaa 16844473  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 37394207 - 37394358
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttct---tcactgggaaac 110  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||  |||  | || |||||||||||||| ||||   ||||||| ||||    
T  37394207 gaatcaggatttggctggaaagcggtagcaatcggatatggatgtggggcaatatatgggttgctgttgggatataatgtattcttcttcactggaaaac 37394306  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaag 162  Q
    | |||||||||||||||| ||||||||  || |||| |||||||||||||||    
T  37394307 cccaatggcttgcaagacatgttgaaaatatgtttaacataagattgaaaag 37394358  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 37402319 - 37402475
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttct---tcactgggaaac 110  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||   ||  ||||||||||||||||||| ||||   ||||||| ||||    
T  37402319 gaatccggatttggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaac 37402418  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    ||||||||||||  ||| ||||||||| ||| |||| ||||||| ||||||| ||||    
T  37402419 ctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaa 37402475  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 37531939 - 37531783
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttc---actgggaaac 110  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||   ||  ||||||||||||||||||| ||||||   ||||| ||||    
T  37531939 gaatcaggatttggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaac 37531840  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    ||||||||||||  ||| ||||||||| ||| |||| ||||||| ||||||| ||||    
T  37531839 ctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaa 37531783  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 37593043 - 37592887
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttc---actgggaaac 110  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||   ||  ||||||||||||||||||| ||||||   ||||| ||||    
T  37593043 gaatccggatttggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaac 37592944  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    ||||||||||||  ||| ||||||||| ||| |||| ||||||| ||||||| ||||    
T  37592943 ctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaa 37592887  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 37695434 - 37695278
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttc---actgggaaac 110  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||   ||  ||||||||||||||||||| ||||||   ||||| ||||    
T  37695434 gaatcaggatttggctggaaagctgtggcaattggatatggatgtggggcaatatccgggttcctcttgggatataatgtattcttcttcactggtaaac 37695335  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    ||||||||||||  ||| ||||||||| ||| |||| ||||||| ||||||| ||||    
T  37695334 ctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaa 37695278  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 37383644 - 37383787
Alignment:
Q  11 gaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttcactgggaaac 110  Q
    |||||||| |||||||||||||||||||| | ||||||||||| ||||||  | ||| |||| || || ||||||| |||||||||  | | ||||||||    
T  37383644 gaggaatctggatttggctggaaagcagtggtaataggatatgcatgtggatccgtagttgggatgcttttgggatttaatgtgtttgtaaatgggaaac 37383743  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataaga 154  Q
    | | ||||||| |||||||  ||||||||||||||||| |||||    
T  37383744 cccgatggctttcaagactaattgaaagcatatttagcgtaaga 37383787  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 37701535 - 37701418
Alignment:
Q  7 agatgaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatg---tgttcttcact 103  Q
    |||||| || || ||||||||||||||||| |||||||||||||||| |||||||||| || | ||  | ||||||||||||||||   | |||||||||    
T  37701535 agatgaagagtcaggatttggctggaaagcggtagcaataggatatgcatgtggggcaatattcgggttgctcttgggatataatgtattcttcttcact 37701436  T
Q  104 gggaaacctcaatggctt 121  Q
    || |||||||||||||||    
T  37701435 ggaaaacctcaatggctt 37701418  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 37638585 - 37638434
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatg---tgttcttcactgggaaac 110  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||||||| || | ||  | || |||||||||||||   | ||||||||||| ||||    
T  37638585 gaatccggatttggctggaaagcggtagcaatcggatatgcatgtggggcaatattcgggttgctattgggatataatgtattcttcttcactggtaaac 37638486  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaag 162  Q
    |  ||||||||||||||| |||||||   || |||  |||||||||||||||    
T  37638485 ccgaatggcttgcaagacatgttgaacatatgtttgacataagattgaaaag 37638434  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 37427892 - 37427736
Alignment:
Q  11 gaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatgtgttcttcactgggaaac 110  Q
    |||||||| ||||||||||||||||| |||| |||| |||||| ||||||| || || |||| ||  |||||||||||| |||  |||||| ||||||||    
T  37427892 gaggaatcaggatttggctggaaagcggtagtaataagatatgcatgtgggacaatatttgggatgatcttgggatatattgtactcttcattgggaaac 37427793  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    |  ||||| |||  |||||| ||||    | ||||| ||||||||||||||| ||||    
T  37427792 cataatggtttgttagactttttgagcaaacatttaacataagattgaaaagaacaa 37427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 37822743 - 37822592
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatg---tgttcttcactgggaaac 110  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||||||| |  | ||  | || || ||||||||||   | ||||||||||| ||||    
T  37822743 gaatcaggatttggctggaaagcggtagcaatcggatatgcatgtggggcaatcttcgggttgctattcggatataatgtattcttcttcactggtaaac 37822644  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaag 162  Q
    |  ||||||||||||||| |||||||   || |||  |||||||||||||||    
T  37822643 ccgaatggcttgcaagacatgttgaacatatgtttgacataagattgaaaag 37822592  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 37434549 - 37434425
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatg---tgttcttcactgggaaac 110  Q
    ||||| ||||||||||||||| | ||||  || |||||||||||||||||| || ||||  | || |||||||||||||   | ||||||||||| ||||    
T  37434549 gaatcaggatttggctggaaaacggtagtgatcggatatggatgtggggcaatatttgggttgctgttgggatataatgtattcttcttcactggaaaac 37434450  T
Q  111 ctcaatggcttgcaagacttgttga 135  Q
    | |||||||||   |||||||||||    
T  37434449 cccaatggcttcttagacttgttga 37434425  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 37710346 - 37710190
Alignment:
Q  14 gaatcgggatttggctggaaagcagtagcaataggatatggatgtggggcagtacttggaatcctcttgggatataatg---tgttcttcactgggaaac 110  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||||||| || | ||  | || || ||||||||||   | |||||||| || ||||    
T  37710346 gaatcaggatttggctggaaagcggtagcaatcggatatgcatgtggggcaatattcgggttgctattcggatataatgtattcttcttcaccggtaaac 37710247  T
Q  111 ctcaatggcttgcaagacttgttgaaagcatatttagcataagattgaaaaggacaa 167  Q
    |  ||||||||| ||||| |||||||   || |||  ||||||||||||||| ||||    
T  37710246 ccgaatggcttgtaagacatgttgaacatatgtttgacataagattgaaaagaacaa 37710190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 37439912 - 37439859
Alignment:
Q  11 gaggaatcgggatttggctggaaagcagtagcaataggatatggatgtggggca 64  Q
    |||||||| ||||||||||||||||| || |  || ||||||||||||||||||    
T  37439912 gaggaatcaggatttggctggaaagctgtggtgatcggatatggatgtggggca 37439859  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 41714185 - 41714225
Alignment:
Q  20 ggatttggctggaaagcagtagcaataggatatggatgtgg 60  Q
    |||||||| ||||||||||| ||||| ||||||||||||||    
T  41714185 ggatttggatggaaagcagtggcaattggatatggatgtgg 41714225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 42117157 - 42117117
Alignment:
Q  20 ggatttggctggaaagcagtagcaataggatatggatgtgg 60  Q
    |||||||| ||||||||||| ||||| ||||||||||||||    
T  42117157 ggatttggatggaaagcagtggcaattggatatggatgtgg 42117117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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