View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4480_high_1 (Length: 457)
Name: NF4480_high_1
Description: NF4480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4480_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 8764683 - 8764244
Alignment:
| Q |
17 |
actgcatgtgtattttcttcacccttttttgctctctccatagcaatttcaagtgaaactttgaaaaaatctgattta-tttttatggtttgattgaaag |
115 |
Q |
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| T |
8764683 |
actgcatgtgtattttcttcacccttttttgctctctccatagcaatttcaagtgaaactttgaaaaaatctgatttactttttatggtttgattgaaag |
8764584 |
T |
|
| Q |
116 |
cattattggttaaataatactcacatggttgaggataaggggtttggctacaccatgattttatggaacttaatgagtaaccataaacaatagtggagaa |
215 |
Q |
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| T |
8764583 |
cattattggttaaataatactcacatggttgaggataaggggtttggctacaccatgattttatggaacttaatgagtaaccataaacaatagtggagaa |
8764484 |
T |
|
| Q |
216 |
aagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccat----tgaaaaattattttagggtttggtttgatgagaaatttagagaagggt |
311 |
Q |
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| T |
8764483 |
aagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccattgaatgaaaaatgattttagggtttggtttgatgagaaatttagagaagggt |
8764384 |
T |
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| Q |
312 |
ttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgcctttatatagag-gnnnnnnngtggtggttaacatgtaaactatttg |
410 |
Q |
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| T |
8764383 |
ttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgcctttatatagagaaaaaaaaagtggtggttaaaatgtaaactatttg |
8764284 |
T |
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| Q |
411 |
agactgctcaccatgtcatacttttccaacttagcctatg |
450 |
Q |
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| T |
8764283 |
agactgctcaccatgtcatacttttccaacttagcctatg |
8764244 |
T |
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