View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4481-Insertion-11 (Length: 193)

Name: NF4481-Insertion-11
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4481-Insertion-11
NF4481-Insertion-11
[»] chr2 (24 HSPs)
chr2 (8-192)||(9065605-9065789)
chr2 (20-191)||(8573529-8573700)
chr2 (18-180)||(9328557-9328719)
chr2 (20-184)||(9061165-9061329)
chr2 (8-192)||(16269035-16269219)
chr2 (11-174)||(9284205-9284368)
chr2 (23-180)||(9320940-9321097)
chr2 (20-187)||(9291894-9292055)
chr2 (8-180)||(10353067-10353239)
chr2 (8-189)||(9274470-9274651)
chr2 (20-116)||(10335866-10335962)
chr2 (33-183)||(10347740-10347890)
chr2 (8-183)||(9315974-9316143)
chr2 (23-110)||(10371886-10371973)
chr2 (48-182)||(12018940-12019074)
chr2 (8-183)||(7115654-7115832)
chr2 (20-102)||(12006142-12006224)
chr2 (11-104)||(9364662-9364755)
chr2 (33-182)||(11987524-11987673)
chr2 (8-117)||(12012558-12012667)
chr2 (18-103)||(7611974-7612059)
chr2 (18-103)||(17566105-17566190)
chr2 (31-101)||(8579522-8579592)
chr2 (138-183)||(10335811-10335856)
[»] scaffold0667 (1 HSPs)
scaffold0667 (20-192)||(4417-4589)
[»] chr3 (2 HSPs)
chr3 (29-185)||(37462442-37462598)
chr3 (41-184)||(39427594-39427740)
[»] chr7 (3 HSPs)
chr7 (8-181)||(45243656-45243829)
chr7 (29-181)||(45237907-45238059)
chr7 (8-162)||(45230408-45230565)
[»] chr1 (4 HSPs)
chr1 (8-180)||(29443333-29443505)
chr1 (20-184)||(29467804-29467968)
chr1 (8-184)||(29453316-29453492)
chr1 (20-180)||(29423223-29423383)
[»] chr8 (1 HSPs)
chr8 (41-189)||(41966750-41966898)
[»] chr4 (2 HSPs)
chr4 (33-117)||(26574882-26574966)
chr4 (20-87)||(561273-561340)
[»] chr5 (1 HSPs)
chr5 (24-102)||(36224454-36224532)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 4e-86; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 9065605 - 9065789
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9065605 tttgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 9065704  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaattgag 192  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  9065705 atcttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatggaagtaaggttctgttggaagcaattgag 9065789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 7e-57
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 8573529 - 8573700
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||      
T  8573529 tgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcac 8573628  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaattga 191  Q
    | ||||||| | | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8573629 tccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgttggaaggaattga 8573700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 9328719 - 9328557
Alignment:
Q  18 tttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttc 117  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  9328719 tttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttc 9328620  T
Q  118 cattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttg 180  Q
    |||| || ||||| | ||| |||||||||||||||||  ||||||||||  |||||| |||||    
T  9328619 catttacctttgaaatctttgaggcctttaggttatttgagtgatggaaaaaaggttttgttg 9328557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 9061165 - 9061329
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |    
T  9061165 tgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaa 9061264  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaag 184  Q
    ||||| ||||     || |||||| ||| ||||||| ||||||||| |||||||| |||||||||    
T  9061265 ttcacctttggactttttgaggccgttatgttattctagtgatggaggtaaggttctgttggaag 9061329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 16269219 - 16269035
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||| ||    
T  16269219 tttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttggtgcaaactttttaccttggttaa 16269120  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaattgag 192  Q
    ||| ||||||  ||||||||||  |  ||| |  ||| |||||||||| |||||||||||||||||| | || ||||||||||||    
T  16269119 atcgtgtttcacttcacatttgcgatattcaaatcctataggttattctagtgatggaagtaaggttctctttgaaggaattgag 16269035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 9284205 - 9284368
Alignment:
Q  11 gtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatc 110  Q
    |||| ||| |||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  9284205 gtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttactttggttaaatc 9284304  T
Q  111 ttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggtt 174  Q
      | |||  || || ||||| | ||| |||||||||||||||||| |||||||| |||||||||    
T  9284305 acggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggtt 9284368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 9321097 - 9320940
Alignment:
Q  23 attatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattc 122  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||| | |||     
T  9321097 attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgattt 9320998  T
Q  123 acatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttg 180  Q
    || ||||| | ||| |||||||||||||||||| ||||||||||  |||||| |||||    
T  9320997 acctttgaaatctttgaggcctttaggttattcgagtgatggaaaaaaggttttgttg 9320940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 9292055 - 9291894
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||      |      
T  9292055 tgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaactttttactttggttaaatc-----gcgg 9291961  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaa 187  Q
    ||||| ||||| | ||| |||||||||| ||||||| || ||||||||||||||| ||||||| ||||    
T  9291960 ttcac-tttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgttggacggaa 9291894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 10353239 - 10353067
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| || ||||| ||  |||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||    
T  10353239 tttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttactgtggttaa 10353140  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttg 180  Q
    ||||| |||| ||| || ||||  | ||| ||||| |||||||||||| |||||| |||  |||||| |||||    
T  10353139 atcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgatagaaaaaaggttttgttg 10353067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 9274651 - 9274470
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| | ||||||||||  || |||| || |||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |  |    
T  9274651 tttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgtaaactttttactttgatgga 9274552  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaatt 189  Q
    | ||||||||| |  | |||||  |  ||  ||||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  9274551 accttgtttccttgtagatttggaaatttttaggcctttatgttattctagtgatggaagtaaggttctgttggaaggaatt 9274470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 10335962 - 10335866
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgttt 116  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| |||||    
T  10335962 tgaattatcaaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgttt 10335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 10347890 - 10347740
Alignment:
Q  33 tactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgaca 132  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||   | || |||||| ||| || ||||| |    
T  10347890 tactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaa 10347791  T
Q  133 gcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaa 183  Q
       | ||||||  || ||||||| |||||||||||||||||| ||||||||    
T  10347790 ttgttgaggcccatatgttattctagtgatggaagtaaggttctgttggaa 10347740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 9316143 - 9315974
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||      ||||||||||||||||||||||||||| ||    
T  9316143 tttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggatc------tagttggtgtaaactttttactttggttaa 9316050  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaa 183  Q
     || ||||||  || |  |||||    || || ||||||||||||||| ||||| |||||||||||| | ||||||    
T  9316049 ttcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttctattggaa 9315974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 10371973 - 10371886
Alignment:
Q  23 attatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatc 110  Q
    ||||| ||||||||||  |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  10371973 attataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttggttaaatc 10371886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 12018940 - 12019074
Alignment:
Q  48 ttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggccttta 147  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||| ||||||  || || ||| | |  || ||| ||||||    
T  12018940 ttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagcccttta 12019039  T
Q  148 ggttattccagtgatggaagtaaggttgtgttgga 182  Q
    |||||||| ||||||||||  |||||| |||||||    
T  12019040 ggttattcgagtgatggaaaaaaggttttgttgga 12019074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 7115654 - 7115832
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| ||||||||  |||||||||||  |||| ||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||| ||    
T  7115654 tttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaactttttacattggttaa 7115753  T
Q  108 atcttgtttccattcacatttg---aca-gcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaa 183  Q
     || |||||| ||| |  ||||   ||| | ||| ||||||||||||||||| ||||||||||| |||||| | ||||||    
T  7115754 ttcgtgtttcgatttatctttgattacatggttc-aggcctttaggttattctagtgatggaagcaaggttctattggaa 7115832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 12006142 - 12006224
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttg 102  Q
    |||||||| |||||||||| |||||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||    
T  12006142 tgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttg 12006224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 9364755 - 9364662
Alignment:
Q  11 gtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggt 104  Q
    |||| ||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||  | |||||||||||||||| | |||||||||||    
T  9364755 gtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttggt 9364662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 11987524 - 11987673
Alignment:
Q  33 tactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgaca 132  Q
    |||||| ||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |  |||| ||||||  || || ||||| |    
T  11987524 tactaagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaa 11987623  T
Q  133 gcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttgga 182  Q
     ||| ||| ||||| |||||||| |||||||| |  |||||| |||||||    
T  11987624 tctttgagccctttgggttattcgagtgatggtaaaaaggttttgttgga 11987673  T

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Target: chr2; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 12012558 - 12012667
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| ||||| || |||||||||| |||||||  | |||||||||||||||||| | || ||||||||||||||||||||||||||||||  |    
T  12012558 tttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtgga 12012657  T
Q  108 atcttgtttc 117  Q
    ||| ||||||    
T  12012658 atcgtgtttc 12012667  T

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Target: chr2; HSP #21
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 7612059 - 7611974
Alignment:
Q  18 tttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttgg 103  Q
    ||||||||||||||||| |||  |||||| |||||||||||||||||||||||  | |||||||||||||||| | ||||||||||    
T  7612059 tttgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg 7611974  T

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Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 17566105 - 17566190
Alignment:
Q  18 tttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttgg 103  Q
    |||||||||| ||||||||||  |||||| ||||||||| ||||||||||||| |||||||| |||||||||| | ||||| ||||    
T  17566105 tttgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg 17566190  T

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Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 8579522 - 8579592
Alignment:
Q  31 actactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttacttt 101  Q
    ||||||||  |||| | ||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||    
T  8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt 8579592  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 10335856 - 10335811
Alignment:
Q  138 gaggcctttaggttattccagtgatggaagtaaggttgtgttggaa 183  Q
    |||||||||||||||||  |||||||||||||||||| | ||||||    
T  10335856 gaggcctttaggttattgtagtgatggaagtaaggttctattggaa 10335811  T

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Target: scaffold0667 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 4589 - 4417
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||  | ||||||||||||||||||||||||| || | ||||| ||| ||      
T  4589 tgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactttttactatgatgaaatcgtgtgtcac 4490  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaaggaattgag 192  Q
    ||||||||||| | ||||||| |||||| ||||||| |||||||||||||||||| || | ||||||||||||    
T  4489 ttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggttctgattgaaggaattgag 4417  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 37462598 - 37462442
Alignment:
Q  29 aaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacattt 128  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||||| ||||||  ||||| |||    
T  37462598 aaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcaccttt 37462499  T
Q  129 gacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaagg 185  Q
    || | ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  37462498 gaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttggaagg 37462442  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 39427740 - 39427594
Alignment:
Q  41 ttgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggt---caaatcttgtttccattcacatttgacagcttc 137  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||||| | |||||||| ||     |||  |||||| |||||| ||| |   |||     
T  39427740 ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttttgtaggggaatggtgtttcaattcacctttaatgtcttt 39427641  T
Q  138 gaggcctttaggttattccagtgatggaagtaaggttgtgttggaag 184  Q
    || ||||||| |||||||||||||| ||||||| ||| |||||||||    
T  39427640 gaagcctttatgttattccagtgatagaagtaaagttctgttggaag 39427594  T

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Target: chr7 (Bit Score: 86; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 45243829 - 45243656
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| |||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||    
T  45243829 tttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttggttaa 45243730  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttgg 181  Q
    ||| |||||| |||  ||||||  | ||| |||||||||| ||||||| |||||| ||||||| ||| ||||||    
T  45243729 atcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaagttctgttgg 45243656  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 45238059 - 45237907
Alignment:
Q  29 aaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacattt 128  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| |||  ||| |    
T  45238059 aaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatct 45237960  T
Q  129 gacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttgg 181  Q
    || |   | |||||||||| ||||||| || ||| ||||||| ||| ||||||    
T  45237959 gaaattgttgaggcctttatgttattcaagcgatcgaagtaaagttctgttgg 45237907  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 45230565 - 45230408
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggt---tgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggt 104  Q
    ||||||| ||| |||||||| |||||| ||||||||||| |   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45230565 tttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttggt 45230466  T
Q  105 caaatcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgat 162  Q
     ||||| || ||| |||  ||||||  | ||| ||| |||||| ||||||| ||||||    
T  45230465 taaatcgtggttcaattttcatttggtatctttgagacctttatgttattcgagtgat 45230408  T

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Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 29443333 - 29443505
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||   |    
T  29443333 tttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctga 29443432  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttg 180  Q
    ||| ||||||  || || ||||| ||||| ||||  |||||||||||| || ||| |||||| |||| |||||    
T  29443433 atcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgttg 29443505  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 29467804 - 29467968
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    |||||||| |||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||      
T  29467804 tgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcac 29467903  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaag 184  Q
    || ||| |||  | ||| |||||||||||||||||| || |||||||||| |||| |||| ||||    
T  29467904 tttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttgaag 29467968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 29453316 - 29453492
Alignment:
Q  8 tttgtataattttgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaa 107  Q
    ||||||| ||| |||||||| |||||  ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||   |    
T  29453316 tttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaactttttactttggcgga 29453415  T
Q  108 atcttgtttccattcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttggaag 184  Q
    ||| ||||||  || || ||||| | ||| | ||||||||| |||||| || |||||||||| |||| |||||||||    
T  29453416 atcatgtttcattttacctttgaaaactttgtggcctttagcttattcgagcgatggaagtatggttctgttggaag 29453492  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 29423383 - 29423223
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttcca 119  Q
    |||||||| |||||  ||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||   |||| ||||||      
T  29423383 tgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcac 29423284  T
Q  120 ttcacatttgacagcttcgaggcctttaggttattccagtgatggaagtaaggttgtgttg 180  Q
     | || ||||| ||||| ||||| ||||| |||||| || |||||| ||| |||| |||||    
T  29423283 cttacctttgaaagctttgaggcttttagcttattcgagcgatggaggtatggttctgttg 29423223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 8e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 41966750 - 41966898
Alignment:
Q  41 ttgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgag 140  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||  ||||  ||||| | | | | |    
T  41966750 ttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttggg 41966849  T
Q  141 gcctttaggttattccagtgatggaagtaaggttgtgttggaaggaatt 189  Q
    |  |||||||| ||| || |||||||| |||||| ||||| ||||||||    
T  41966850 ggttttaggttgttctagcgatggaaggaaggttctgttgcaaggaatt 41966898  T

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Target: chr4 (Bit Score: 65; Significance: 8e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 26574966 - 26574882
Alignment:
Q  33 tactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttc 117  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||    
T  26574966 tactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttc 26574882  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 561340 - 561273
Alignment:
Q  20 tgaattatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgt 87  Q
    ||||| || ||||||||||  |||||| |||||| |||||||||||||||| ||||||||||||||||    
T  561340 tgaataataaaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt 561273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 36224532 - 36224454
Alignment:
Q  24 ttatgaaactactaaaattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttg 102  Q
    ||||| ||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  36224532 ttatggaactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg 36224454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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