View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-12 (Length: 160)
Name: NF4481-Insertion-12
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 34468534 - 34468679
Alignment:
| Q |
8 |
tgttcaacttcagacacctcttgtggctgggaaatgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagt |
107 |
Q |
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| T |
34468534 |
tgttcaacttcagacacctcttgtggctgggaaatgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagt |
34468633 |
T |
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| Q |
108 |
tgaggtagcttgatacagctctggtgttggttacctctccgggccg |
153 |
Q |
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| T |
34468634 |
tgaggtagcttggtacagctctggtgttggttacctctctgggccg |
34468679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 27629709 - 27629795
Alignment:
| Q |
8 |
tgttcaacttcagacacctcttgtggctggg-aaatgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagg |
94 |
Q |
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| T |
27629709 |
tgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggag-aggtggaggagacacgaaaacttcatagg |
27629795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 34469071 - 34469006
Alignment:
| Q |
87 |
ttgatagggtgctgattgagttgaggtagcttgatacagctctggtgttggttacctctccgggcc |
152 |
Q |
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| T |
34469071 |
ttgatagggtgctgattgagttgaggtagcttggtacagctctggggttggttacctctctgggcc |
34469006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 34522410 - 34522542
Alignment:
| Q |
8 |
tgttcaacttcagacacctcttgtggctgggaaa-tgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgag |
106 |
Q |
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| T |
34522410 |
tgttcaacttcagacacctctggtagttgggaaaatgaacttgcctcagattggggag-aggtgaaggagacacgaaaacttgataggatgtagatggaa |
34522508 |
T |
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| Q |
107 |
ttgaggtagcttgatacagctctggtgttggttac |
141 |
Q |
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| T |
34522509 |
ctgaggttgcttgatgcagctc-ggtgctggttac |
34522542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 34488205 - 34488289
Alignment:
| Q |
10 |
ttcaacttcagacacctcttgtggctgggaaa-tgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagg |
94 |
Q |
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| T |
34488205 |
ttcaacttcagtcacctctggtggctggtaaaatgaacttgcctcagattggggag-aggtggaggagacacgaaaacttgatagg |
34488289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 34509693 - 34509791
Alignment:
| Q |
46 |
cttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagttgaggtagcttgatacagctctggtgttggttacctc |
144 |
Q |
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| T |
34509693 |
cttgcctaagattggagagaaggtggaggagacaccaaaacttgatcgggtgtagatggaactgaggtagcttggtgcagctcggatgctggttacctc |
34509791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 34488547 - 34488445
Alignment:
| Q |
41 |
atgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagttgaggtagcttgatacagctctggtgttggtta |
140 |
Q |
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| T |
34488547 |
atgaacttgtctcggaatggggagcaggtagaggagacacaaaaactggttagggtgcagatggaattttggttgcttgatgcagctcaggtggtggtta |
34488448 |
T |
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| Q |
141 |
cct |
143 |
Q |
| |
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||| |
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| T |
34488447 |
cct |
34488445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 27630055 - 27629952
Alignment:
| Q |
41 |
atgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagttgaggtagcttgatacagctctggtgttggtta |
140 |
Q |
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||||||||| ||| |||||| ||||||||||||||||||| ||| || | |||||||| ||| || | |||| ||||||| ||||| ||| |||||| |
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| T |
27630055 |
atgaacttgtctcggattggagagcaggtggaggagacacgaaaactggttagggtgcagatggaacttaggttgcttgatgcagctaaagtggtggtta |
27629956 |
T |
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| Q |
141 |
cctc |
144 |
Q |
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|||| |
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| T |
27629955 |
cctc |
27629952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 34522754 - 34522652
Alignment:
| Q |
41 |
atgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagggtgctgattgagttgaggtagcttgatacagctctggtgttggtta |
140 |
Q |
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||||||||| ||| || ||||||||||||||||||||||| ||| || | ||||| || ||| | | |||| ||||||| |||||| |||| |||||| |
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| T |
34522754 |
atgaacttgtctcggaatggggagcaggtggaggagacacgaaaactggttagggggcagatgaaacttaggttgcttgatgcagctcaggtggtggtta |
34522655 |
T |
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| Q |
141 |
cct |
143 |
Q |
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||| |
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| T |
34522654 |
cct |
34522652 |
T |
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