View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-3 (Length: 661)
Name: NF4481-Insertion-3
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 148 - 661
Target Start/End: Complemental strand, 10546919 - 10546393
Alignment:
| Q |
148 |
acttgatatattcatgaaaccataccccaccacctccttgttttccgcccatgaaaagttttgattggttaacactgcttctggatgatttcgggacaat |
247 |
Q |
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| T |
10546919 |
acttgatatattcatgaaaccataccccaccacctccttgttttccgcccatgaaaagttttgattggttaacactgcttctggatgatttcgggacaat |
10546820 |
T |
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| Q |
248 |
a----------------gcacttctcttacaataatttattcattcaaagcatggaattaacatgtcgcctgcaccgccaatctaggtataccatcctta |
331 |
Q |
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| T |
10546819 |
atctctcccgttaaatagcacttctcttacaataatttt---attcaaagcatggaattaacatgtcgcctgcaccgccaatctaggtataccatcctta |
10546723 |
T |
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| Q |
332 |
acgcttgctttgctagcgctcaatgggtcaaggtttacaccaaacatatctctagtgacagtaaatccacaaccagtttttcctatacatgaactttcca |
431 |
Q |
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| T |
10546722 |
acgcttgctttgctagcgctcaatgggtcaaggtttacaccaaacatatctctagtgacagtaaatccacaaccagtttttcctatacatgaagtttcca |
10546623 |
T |
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| Q |
432 |
tcatagattggctattcaaagattcccaagaacctttcttgaaagaaccacattgaccttgtggatttccaaaactagcaaaattgattgaagtaattac |
531 |
Q |
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| T |
10546622 |
tcatagattggctattcaaagattcccaagaacctttcttgaaagaaccacattgaccttgtggatttccaaaactagcaaaattgattgaagtaattac |
10546523 |
T |
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| Q |
532 |
ttgtccattttggcatgatagttctaattttccaccttcatatacattagcacaaatagtttttgttgtctcagttaggaaggaaacattttgaggattt |
631 |
Q |
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| T |
10546522 |
ttgtccattttggcatgatagttctaattttccaccttcatatacattagcacaaatagtttttgttgtctcagttaggaaggaaacattttgaggattt |
10546423 |
T |
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| Q |
632 |
ccacctatttcttcaaataaaatcaatgtg |
661 |
Q |
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| T |
10546422 |
ccacctatttcttcaaataaaatcaatgtg |
10546393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 10547014 - 10546924
Alignment:
| Q |
8 |
ataagaggggtgtggaacataattttggacatgctagtttatttcaacttggtaatttgaacatatatgtttacaataagggaaaagatat |
98 |
Q |
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| T |
10547014 |
ataagaggggtgtggaacataattttggacatgctagtttatttcaacttggtaatttgaacatatatgtttacaataagggaaaagatat |
10546924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 464 - 661
Target Start/End: Complemental strand, 9644653 - 9644456
Alignment:
| Q |
464 |
cctttcttgaaagaaccacattgaccttgtggatttccaaaactagcaaaattgattgaagtaattacttgtccattttggcatgatagttctaattttc |
563 |
Q |
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| T |
9644653 |
cctttcttaaaagaaccacactgaccttctggatttccatagctagcgaattgaatttgtgacattacttgtccactttgacatgatagttcaaactgtg |
9644554 |
T |
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| Q |
564 |
caccttcatatacattagcacaaatagtttttgttgtctcagttaggaaggaaacattttgaggatttccacctatttcttcaaataaaatcaatgtg |
661 |
Q |
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| T |
9644553 |
caccttcatatacattagcacaaatagttcctgttgtcacagtttggaattgaacactttgaggatttccaccaatttcttcaaataaaaccaatgtg |
9644456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 41554426 - 41554371
Alignment:
| Q |
164 |
aaaccataccccaccacctccttgttttccgcccatgaaaagttttgattggttaa |
219 |
Q |
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| T |
41554426 |
aaaccatatcccatcacctccttattttccgcccatgaagagttttgattggttaa |
41554371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 18397222 - 18397181
Alignment:
| Q |
176 |
accacctccttgttttccgcccatgaaaagttttgattggtt |
217 |
Q |
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| T |
18397222 |
accacctccttgttttccgctcatgaacagttttaattggtt |
18397181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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