View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-4 (Length: 548)
Name: NF4481-Insertion-4
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Complemental strand, 1735092 - 1734555
Alignment:
| Q |
7 |
aatacgccaaaccaaaatcaattatttcttctgcaaacataagataggagatatatggaccctctctacctgctttcataagttcatacaaagaacaaac |
106 |
Q |
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| T |
1735092 |
aatacgccaaaccaaaaccaattttttcttctgcaaacataagataggagatatatggaccctctctacctgctttcatcagttcatacaaagaacaaac |
1734993 |
T |
|
| Q |
107 |
aaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcaccacccacaagacattcatttgcactaatgtcacgcaa |
206 |
Q |
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| T |
1734992 |
aaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcaccacccacaagacattcatttgcactaatgtcacgcaa |
1734893 |
T |
|
| Q |
207 |
ttcataatgaaattcaccatagttggggggagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccttagcaagataaa |
306 |
Q |
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| T |
1734892 |
ttcataatgaaattcaccatagttgggggaagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccttagcaagataaa |
1734793 |
T |
|
| Q |
307 |
cttttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggta |
406 |
Q |
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| T |
1734792 |
cttttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggta |
1734693 |
T |
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| Q |
407 |
caaaatccgtgcaatacaaagacttctcaaaagatcatccattcaagtactactttcgtccaacaagtttaactccggagttctgatgatatattttact |
506 |
Q |
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| T |
1734692 |
caaaatccgtgcaatacaaagacttctcagaagatcatccattcaagtactactttcgtccaacaagtttaactgtggagttctgatgatatattttact |
1734593 |
T |
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| Q |
507 |
agtattgatactttaatatgatggaactcggtgtgtata |
545 |
Q |
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| T |
1734592 |
agtattgatac-ataatatgatggaactcggtgtgtata |
1734555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 48577580 - 48577508
Alignment:
| Q |
309 |
tttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaata |
381 |
Q |
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|||||||||||||||| |||| || ||| ||||||||||||||||||| || |||| || | | ||||||||| |
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| T |
48577580 |
tttgattgcaaaatagacaattttgcttttcattttagccatactatgtagaatctactaagcgataacaata |
48577508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 15052402 - 15052322
Alignment:
| Q |
415 |
gtgcaatacaaagacttctcaaaagatcatccattcaagtactactttcgtcc-aacaagtttaactccggagttctgatg |
494 |
Q |
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|||||| |||| |||||||| ||||||||||||| ||||| | |||||||| |||| |||||||| | ||||||||||| |
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| T |
15052402 |
gtgcaacacaagaacttctcatgagatcatccattctagtaccattttcgtccaaacacgtttaactgcagagttctgatg |
15052322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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