View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-7 (Length: 358)
Name: NF4481-Insertion-7
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 26840422 - 26840074
Alignment:
| Q |
12 |
gaaccatttttctttgtagtgcagggctagaaaactccatatttcaaactagaggaactgtttgtaagtgtagtgctgggctaagaattcaaagcttttg |
111 |
Q |
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| T |
26840422 |
gaaccatttttctttgtagtgcagggctagaaaactccatatttcaaactagaggaactgtttgtcagtgtagttctgggctaagaattcaaagcttttg |
26840323 |
T |
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| Q |
112 |
aggacaaaatggccacttgcatgaagtttgtgtgaatgggtttgaattgaggagcatttgttactattcacttctgattttttcggtgttgctcttctct |
211 |
Q |
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| T |
26840322 |
aagacaaaatggccacttgcatgaagtttttgtgaatgggtttgaattgaggagcatttgttactattcacttctgattttttcggtgctgctcttctct |
26840223 |
T |
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| Q |
212 |
ttttcaacctctgcaaagtatagtgtctacaaagtgtctaaagaattacagtatcatttttgtttattgatgcaagtatagtgtcatagtggatctcatg |
311 |
Q |
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| T |
26840222 |
ttttcaacctctgcaaagtatagtgtctacaaagtgtctaaagaattacaatatcatttttgtttattggtgcaagtatagtgtcacagtggatctcatg |
26840123 |
T |
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| Q |
312 |
atatatgtac--agtgtctaaagaagtatgtgttagtactaataggtcc |
358 |
Q |
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| T |
26840122 |
atatatgtacagagtgtctaaagaagtatgtgttagtactaataggtcc |
26840074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 50975266 - 50975168
Alignment:
| Q |
262 |
gtatcatttttgtttattgatgcaagtatagtgtcatagtggatctcatgatatatgt--acagtgtctaaagaagtatgtgttagtactaataggtcc |
358 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
50975266 |
gtatcatttttgtttattggtgcaagtatagtgtcatagtggatctcatgatatatgtgcagagtgtctaaagaagtatgtgttagtactaataggtcc |
50975168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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