View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-8 (Length: 320)
Name: NF4481-Insertion-8
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 31632728 - 31632665
Alignment:
| Q |
254 |
tggcgcgatgcaagtctatcactcctccgaaacctcccatagacttccaaccaccggacccgaggga |
320 |
Q |
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| T |
31632728 |
tggcgcgatgtaagtctatcactcct---agacctcccatagacttccaaccaccggacccaaggga |
31632665 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 31674641 - 31674858
Alignment:
| Q |
39 |
aaccacgccctttgtgaactagtttgaggtggactccacattctaaccgagttgcgaaacctccttccac-taggggaggcatatctcagactac-tccc |
136 |
Q |
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| T |
31674641 |
aaccacaccctatatgaaccaatttgaggtggaattcacattctcactaagtaacgaaacctccttccacctgggggaggcatatcttagagtacctcct |
31674740 |
T |
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| Q |
137 |
ctctcacccgagtgataagcacttgactagtgttgcacctcgcataagggatatccctccaaaggcatgttcaacatatgtggagtctctaataccattt |
236 |
Q |
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| T |
31674741 |
ctcccaccctagtggaaagcacctaactagaatcgtaactcacacaaaggatatccctccaatggcatgttccacctatgaagagtctcaaatgccattt |
31674840 |
T |
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| Q |
237 |
ctccagacgattcaggttg |
255 |
Q |
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| T |
31674841 |
c-ctagaagattcaggttg |
31674858 |
T |
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