View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481-Insertion-9 (Length: 259)
Name: NF4481-Insertion-9
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 33315802 - 33315572
Alignment:
| Q |
30 |
ccaccaccaccacctcccaacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaatcatttgatgtga |
128 |
Q |
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| T |
33315802 |
ccaccaccaccacctcccaacaatgagggtcaaggagaacaagttcctttagatttgtcacaatcttccccgcaaacacaagagcaattatttgatgtga |
33315703 |
T |
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| Q |
129 |
acgtgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgc |
228 |
Q |
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| T |
33315702 |
atgtgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcacctattggagttaggccaccacctattagggttcaaaatctaaatgc |
33315603 |
T |
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| Q |
229 |
acgtctgaatgaacgacaaatgtttacatct |
259 |
Q |
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| T |
33315602 |
acgtctgaatggataacaaatgcttacatct |
33315572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 38984141 - 38984367
Alignment:
| Q |
33 |
ccaccaccacctcccaacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaatcatttgatgtgaacg |
131 |
Q |
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| T |
38984141 |
ccaccaccacgtctcaacaatgcgagtcaaggaaatgaagttgctttagatttgtcacaatttgccccacaaacacaagagcaattatttgatgtgaatg |
38984240 |
T |
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| Q |
132 |
tgcaaggaccacaaccaataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacg |
231 |
Q |
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| T |
38984241 |
tgcaaggaccacaaccaataggaattagacagtgaacttttgatccagcaccgattggagttaggccaccacctatta-gggtcaaactccaaatgcacg |
38984339 |
T |
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| Q |
232 |
tctgaatgaacgacaaatgtttacatct |
259 |
Q |
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| T |
38984340 |
tctgaatgaacaacaaatgcttacatct |
38984367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 32794055 - 32794108
Alignment:
| Q |
206 |
attaggggtcaaaatccaaatgcacgtctgaatgaacgacaaatgtttacatct |
259 |
Q |
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| T |
32794055 |
attaggggtcaaactccaaatgcacgtatgaatgaacaacagatatttacatct |
32794108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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