View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_high_11 (Length: 384)
Name: NF4481_high_11
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 44186768 - 44187119
Alignment:
| Q |
12 |
atgagatgaagattactatgcctagtgt---gtaagagtgaatcaatggagaagatgcaggccaagttgatgatgatgatgaaaatgagattgacgaaga |
108 |
Q |
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| T |
44186768 |
atgacatggagattactatgccgagtgtactgtaagagtgaatcaatggagaagatggaggccaagttgatgatgatgatgaaaatgagattgacgaaga |
44186867 |
T |
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| Q |
109 |
ttatcaacactttagtggggaagaagctttgaaaatttattgcaacatatcactaaattaaaattaaacctaccaccagtttatcattcatgtattaact |
208 |
Q |
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| T |
44186868 |
ttatcaacactttagtggggaagaagctttgaaaatttattgcaacatatcactaaattaaaattaaacctaccaccagtttatcattcatgtattaact |
44186967 |
T |
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| Q |
209 |
atattgatttgctcatcttttgcaccgtaaagagttagaggatgtgttaacattcactaaatttataaaatcaaacctattatttttatcttgttgtttt |
308 |
Q |
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| T |
44186968 |
ttattgatttgctcatcttttgcaccgtaa------agaggatgtattaacattcactaaat---taaaatcaaacctattatttttatcttgttgtttt |
44187058 |
T |
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| Q |
309 |
gctttgaccgtggatttgttttacatatagggtgctagattaaatctatatactagtattg |
369 |
Q |
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| T |
44187059 |
gctttgaccgtggatttgttttacatatagggtgctagattaaatctatatactagtattg |
44187119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 142
Target Start/End: Original strand, 45872314 - 45872409
Alignment:
| Q |
44 |
gagtgaatcaatggagaagatgcaggccaagttgatgatgatgatgaaaatgagattgacgaagattatcaacactttagtggggaagaagctttgaaa |
142 |
Q |
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| T |
45872314 |
gagtgtatccatggataagatgcaggtcaagttgat---gatgatgagaataggattgacgaagattaccaacactttagtaagaaagaagcttggaaa |
45872409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 8015062 - 8015105
Alignment:
| Q |
44 |
gagtgaatcaatggagaagatgcaggccaagttgatgatgatga |
87 |
Q |
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| T |
8015062 |
gagtgtatccatggagaagatgcaggccaagttgatgatgatga |
8015105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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