View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_high_6 (Length: 480)
Name: NF4481_high_6
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 5655268 - 5655739
Alignment:
| Q |
19 |
atttgcaggagcatatttgaatgcaatttgtccaaaattaactaaaaccataatgtctatatttgcagccaaagttggacataatggagtgctgaattcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655268 |
atttgcaggagcatatttgaatgcaatttgtccaaaattaactaaaaccataatgtctatatttgcagccaaagttggacataatggagtgctgaattcc |
5655367 |
T |
|
| Q |
119 |
tctgattgacagtggattacatgcaccaattctgagtctaatgtgaagaaaactttcttttgccttggatcaaatccacaaccaattactgtatcagttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655368 |
tctgattgacagtggattacatgcaccaattctgagtctaatgtgaagaaaactttcttttgccttggatcaaatccacaaccaattactgtatcagttc |
5655467 |
T |
|
| Q |
219 |
ctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagatttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655468 |
ctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaattttacaattagatatcataaagaaacagaaattgaaacaagatttg |
5655567 |
T |
|
| Q |
319 |
taaaagtattaaaac---------------tttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttttca |
403 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5655568 |
taaaagtattaaaactatagtacttgtgaatttgtgcagcattttattagtgttacctattgactaacatattttgacctatagaaatgtaatgttttca |
5655667 |
T |
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| Q |
404 |
aatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgcttct |
475 |
Q |
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| T |
5655668 |
aatggtaaataaatgcaatttataattaccatcaagaaacacagaaccatttgagttgaaccctatgcttct |
5655739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 47049226 - 47048974
Alignment:
| Q |
19 |
atttgcaggagcatatttgaatgcaatttgtccaaaattaactaaaaccataatgtctatatttgcagccaaagttggacataatggagtgctgaattcc |
118 |
Q |
| |
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|||||| || |||||||| |||||| ||||||||||||| || || ||||||||||||||||| ||||| || |||||| | ||||||||||| ||||| |
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| T |
47049226 |
atttgctggtgcatatttaaatgcattttgtccaaaattgaccaataccataatgtctatattagcagctaatgttggatacaatggagtgctaaattct |
47049127 |
T |
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| Q |
119 |
tctgattgacagtggattacatgcaccaattctgagtctaatgtgaagaaaactttcttttgccttggatcaaatccacaaccaattactgtatcagttc |
218 |
Q |
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|||| |||||||| | ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||| |||| |
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| T |
47049126 |
tctgtctgacagtgtacaacatgcatcaattctgagtctaacgtgaagaaaactttcttctgccttggatcaaatccacaaccaatcaccttatctgttc |
47049027 |
T |
|
| Q |
219 |
ctacccattgtgctttctcagactcaaatacaagtttcattcctgtaaccaaa |
271 |
Q |
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| | ||| | ||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
47049026 |
caatccactctgccttctcagattcgaatacaagtttcattcctgtaaccaaa |
47048974 |
T |
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