View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_high_8 (Length: 450)
Name: NF4481_high_8
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 55866915 - 55867170
Alignment:
| Q |
17 |
ctaaatacctggccttgtgtgcgttgtttttgttgttcttgtcgacggcgaaaccaaggcaaaacccttctctgcaaccaccacgacttcacctgagaag |
116 |
Q |
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| T |
55866915 |
ctaaatacctggccttgtgtgcgttgattttgttgttcttgtcgactgcgaaaccaaggcaaaacccttctctacaaccaccacgacttcacctgagaag |
55867014 |
T |
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| Q |
117 |
acggattcatggaatagacacggcggcgccgctttcatcactgcccctcttcatatttgatcccggcggaacgctcgcagtcgccgtcaactccacctcg |
216 |
Q |
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| T |
55867015 |
acggattcatggaatagacacggcggcgccgctttcatcagtgcccctctttatatttgatctcggcggaacgctcgcagtcgccgtcaactccacctcg |
55867114 |
T |
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| Q |
217 |
ttccaccgtttcaaactccaacatttcagaatattcaattttggtgattccggcga |
272 |
Q |
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| T |
55867115 |
ttccaccgtttcaaactctaacatttgagaatattcaattttggtgatttcggcga |
55867170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 233 - 442
Target Start/End: Original strand, 43123967 - 43124176
Alignment:
| Q |
233 |
tccaacatttcagaatattcaattttggtgattccggcgaaactttcaccttcgatcccggaagaacagtcatcgtttcaaccccctccaccctgcaccg |
332 |
Q |
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| T |
43123967 |
tccaacatttcagaatattcaattttggtgattccggcgaaactttcaccttcgatcccggaagaacagtcatcgtttctaccccctccaccctgcaccg |
43124066 |
T |
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| Q |
333 |
tcctttcatcatccacaatatcagacgcatcacgttcttctttcaatacgaatctcatcctctccatttctgcgtctttgtcgtaacgacaccaacaccg |
432 |
Q |
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| T |
43124067 |
tcctttcatcatccacaatttcagacgcgtcacgttcttctttcaatatgaatctcatcctctccgtttctgcgtctttgtcgcaacgacaccaacaccg |
43124166 |
T |
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| Q |
433 |
atttcatctc |
442 |
Q |
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||||| |||| |
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| T |
43124167 |
atttcctctc |
43124176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 29143855 - 29143696
Alignment:
| Q |
19 |
aaatacctggccttgtgtgcgttgtttttgttgttcttgtcgacggcgaaaccaaggcaaaacc-----------------cttctctgcaaccaccacg |
101 |
Q |
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| T |
29143855 |
aaatacctggccttgtgtgcgttgtttttgttgttcttgtcgacggcgaaaccaaggcaaaaccaagacttcagaaaaacccttctctgcaaccacgacg |
29143756 |
T |
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| Q |
102 |
acttcacctgagaagacggattcatggaatagacacggcggcgccgctttcatcactgccc |
162 |
Q |
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| T |
29143755 |
acttcacctgagaagacatattcatggaatagacacggc-gcgccgctttcatcactgccc |
29143696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 43123930 - 43123970
Alignment:
| Q |
181 |
ggcggaacgctcgcagtcgccgtcaactccacctcgttcca |
221 |
Q |
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| T |
43123930 |
ggcggaacgcacgcagtcgccgtcaactccacctcgttcca |
43123970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 47558607 - 47558636
Alignment:
| Q |
29 |
ccttgtgtgcgttgtttttgttgttcttgt |
58 |
Q |
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| T |
47558607 |
ccttgtgtgcgttgtttttgttgttcttgt |
47558636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 26463687 - 26463725
Alignment:
| Q |
30 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
68 |
Q |
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| T |
26463687 |
cttgtgtgcgttgtttttgttgttcttgtcgacggcgaa |
26463725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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