View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_high_9 (Length: 444)
Name: NF4481_high_9
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 36059639 - 36059806
Alignment:
| Q |
5 |
ttctgattgaggtgttatagcatagattgtgattattgtcatcacaattttttaactct--tgttttctttcgtattctttgtagttgtagaagaataag |
102 |
Q |
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| T |
36059639 |
ttctgattgaggtgttatagcatagattgtgattattgtcatcacaattttttaactctgttgttttcttttgtattctttgtagttgtagaagaataag |
36059738 |
T |
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| Q |
103 |
gatatttatctttttggacattttgtattcatttattcatttggtaggagttatttctttctttgtat |
170 |
Q |
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| T |
36059739 |
gatatttatctttttggacattttgtattcatttattcatttggtagaagttatttctttctttgtat |
36059806 |
T |
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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 36059808 - 36059889
Alignment:
| Q |
363 |
tacaaaatacttaaacattcaacccagtaagagatccaaaagattaaacattttttcagagaatgaattgattacattttca |
444 |
Q |
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||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||| |||||| |||| |||||||||| |
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| T |
36059808 |
tacaaaatacttaaacactcaagacagtgagagctccaaaagtttaaaggttttttcatagaatgtattgtgtacattttca |
36059889 |
T |
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