View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4481_low_1 (Length: 922)

Name: NF4481_low_1
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4481_low_1
NF4481_low_1
[»] chr7 (3 HSPs)
chr7 (14-906)||(7970545-7971439)
chr7 (467-731)||(37575934-37576200)
chr7 (14-173)||(37576392-37576566)
[»] chr1 (9 HSPs)
chr1 (318-601)||(17590242-17590524)
chr1 (24-196)||(17582762-17582935)
chr1 (34-227)||(17590628-17590832)
chr1 (793-894)||(347108-347209)
chr1 (793-847)||(347336-347390)
chr1 (750-800)||(17590027-17590077)
chr1 (775-828)||(31293973-31294026)
chr1 (800-894)||(38733188-38733283)
chr1 (836-897)||(346926-346987)
[»] chr5 (18 HSPs)
chr5 (467-596)||(32761820-32761949)
chr5 (24-172)||(28474144-28474292)
chr5 (14-185)||(32739361-32739537)
chr5 (18-171)||(32558523-32558682)
chr5 (15-185)||(32656720-32656902)
chr5 (14-83)||(32652464-32652533)
chr5 (14-82)||(32660831-32660899)
chr5 (115-222)||(32857482-32857590)
chr5 (632-731)||(32661409-32661507)
chr5 (14-84)||(32662606-32662676)
chr5 (602-779)||(32738743-32738924)
chr5 (5-62)||(25468977-25469034)
chr5 (24-227)||(32762222-32762432)
chr5 (14-136)||(25477214-25477336)
chr5 (636-693)||(32761700-32761757)
chr5 (323-413)||(32661124-32661215)
chr5 (14-77)||(32767287-32767350)
chr5 (19-84)||(32857635-32857699)
[»] chr3 (2 HSPs)
chr3 (793-845)||(38036009-38036061)
chr3 (793-883)||(50187366-50187456)
[»] chr2 (3 HSPs)
chr2 (787-867)||(7252230-7252310)
chr2 (17-85)||(16751851-16751919)
chr2 (793-827)||(33277558-33277592)
[»] chr4 (3 HSPs)
chr4 (792-867)||(24001526-24001601)
chr4 (325-400)||(25398390-25398468)
chr4 (810-887)||(49190138-49190215)
[»] chr8 (3 HSPs)
chr8 (314-376)||(29506614-29506676)
chr8 (775-845)||(30966069-30966139)
chr8 (782-894)||(3157511-3157624)
[»] chr6 (1 HSPs)
chr6 (762-815)||(32993507-32993560)


Alignment Details
Target: chr7 (Bit Score: 841; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 14 - 906
Target Start/End: Original strand, 7970545 - 7971439
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag----agattttatgtaaggcttgttagc 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  7970545 atcacactgaattgcaacaaaaacgaaaatcatcaaattagactttgaaccattttctataataaaataaagtaagagattttatgtaaggcttgttagc 7970644  T
Q  110 agatcatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaa 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970645 agaccatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaa 7970744  T
Q  210 aatgctatagcggtatagatgatagcaatatggccacaataccaaagtttagagaaacaatacaggttcatataacatacacatataaaagctcatatga 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  7970745 aatgctatagcggtatagatggtagcaatatggccacaataccaaagtttagagaaacaatacaggttcata--acatacacatataaaagctcatatga 7970842  T
Q  310 gagatcattgtaactaatattcaaacccaatgtaaatcaaacaagtcttagcctccaaggcttaaaaaactcatctaagcgtttaaaataattaaaagtg 409  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970843 gaggtcattgtcactaatattcaaacccaatgtaaatcaaacaagtcttagcctccaaggcttaaaaaactcatctaagcgtttaaaataattaaaagtg 7970942  T
Q  410 attcgtagaatagtatcactatctgtattttaaccacttattcatcatatgatcatgctcttcactactagacctcatttgttatgcatctatctctgtt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970943 attcgtagaatagtatcactatctgtattttaaccacttattcatcatatgatcatgctcttcactactagacctcatttgttatgcatctatctctgtt 7971042  T
Q  510 tctccccaagtgttttgtgtctctatagggacatcttggttctacattcttttctgtttcctactaagccgcataagattaggagggcaaatctccttta 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971043 tctccccaagtgttttgtgtctctatagggacatcttggttctacattcttttctgtttcctactaagccgcataagattaggagggcaaatctccttta 7971142  T
Q  610 aagtgagaaaatcaagtattgctaatttaaaaactcttgattgtaatgatgtacctccaatatccatcctgcattttctaattaatagttgataatactt 709  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971143 aagtgagaaaatcaagtatcgctaatttaaaaactcttgattgtaatgatgtacctccaatatccatcctgcattttctaattaatagttgataatactt 7971242  T
Q  710 actttaccctctaaagtgaattctatgttaattgcattaaatgaaataaagcctaaatatgagtatataattgggggcattcgtcaccttacaagtcagt 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971243 actttaccctctaaagtgaattctatgttaattgcattaaatgaaataaagcctaaatatgagtatataattgggggcattcgtcaccttacaagtcagt 7971342  T
Q  810 tttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaaaatccattggaccacctgctaccaggtcaccactattag 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7971343 tttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaaaatccattggaccacctgctaccagatcaccactattag 7971439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 467 - 731
Target Start/End: Complemental strand, 37576200 - 37575934
Alignment:
Q  467 ctcttcactactagacctcatttgttatgcatctatctctgtttctccccaagtgttttgtgtctctatagggacatctt-ggttctacattcttttctg 565  Q
    |||||||||||||||| ||||||||||||||||| ||||  ||| |  | |||| ||||||||||| ||| ||||| ||| |||||  | |||||||||     
T  37576200 ctcttcactactagacatcatttgttatgcatctttctccttttttgtctaagtattttgtgtctccatatggacaactttggttcccctttcttttcta 37576101  T
Q  566 tttcctactaagccgcataagattaggagggcaaat---ctcctttaaagtgagaaaatcaagtattgctaatttaaaaactcttgattgtaatgatgta 662  Q
     | ||||  ||||||||||| ||  |||||  ||||   ||| | |||||||||||||| |||||| | ||||||  ||||||||||||| || || |||    
T  37576100 ctgcctagaaagccgcataatatgtggagg--aaattgcctcttctaaagtgagaaaattaagtatcgttaatttttaaactcttgattgcaacgaagta 37576003  T
Q  663 cctccaatatccatcctgcattttctaattaatagttgataatacttactttaccctctaaagtgaatt 731  Q
    |||| ||||| ||||||  |||||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  37576002 cctctaatattcatccttaattttctaataaatggttgatattacttactataccctctaaagtgaatt 37575934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 37576566 - 37576392
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata-------------aagag-attttatgtaag 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||             ||||| ||| | ||||||    
T  37576566 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccacctgctaaaataaaataaaataaataaaataagagaattctttgtaag 37576467  T
Q  100 gcttgttagcagatcatgcaatcaaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaat 173  Q
    |||||||||||  | ||||||||||||||||||||||||| || || |||||||||| ||||||||||| |||||    
T  37576466 gcttgttagcaagttatgcaatcaaaagtataaccaacataaatctaatcattcttagtttattcttctcaaaat 37576392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 8e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 318 - 601
Target Start/End: Complemental strand, 17590524 - 17590242
Alignment:
Q  318 tgtaactaatattcaaacccaatgtaaatcaaacaagtcttagcctccaaggcttaaaa-aactcatctaagcgtttaaaataattaaaagtgattcgta 416  Q
    ||||||||||||| ||||||||| |||| |||| |||||||| |||||||||||||||| || ||||| |||| ||||||||||  ||| |||| || |     
T  17590524 tgtaactaatatttaaacccaat-taaagcaaataagtcttatcctccaaggcttaaaataattcatccaagcatttaaaataaacaaaggtgactcttt 17590426  T
Q  417 gaatagtatcactatctgtattttaaccacttattcatcat----atgatcatgctcttcactactagacctcatttgttatgcatctatctctgtttct 512  Q
     ||||| |||||||||| ||     |||||||||||||||     ||| |||    |||||||||||||||||||||||| ||||||| |||   |||||    
T  17590425 aaatagaatcactatctcta-----accacttattcatcaacgtcatgctcacttacttcactactagacctcatttgttttgcatctttcttcatttct 17590331  T
Q  513 ccccaagtgttttgtgtctctatagggacatcttggttctacattcttttctgtttcctactaagccgcataagattaggagggcaaat 601  Q
    ||| |||||||||||||||||||||||||| |||||| || ||||||||| |||| || || |||||||||||||| ||||||| ||||    
T  17590330 ccctaagtgttttgtgtctctatagggacaacttggtcctccattcttttttgttgcccacaaagccgcataagatgaggagggaaaat 17590242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 17582935 - 17582762
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaagagattt-tatgtaaggcttgttagcagatcatgcaatc 122  Q
    |||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||| |||||| | ||||||||||||||||| || ||||||||    
T  17582935 attgcaacatcaaagaaaatcatcaaattagactttgaaccatttgttagaataaaataaa-agatttatttgtaaggcttgttagcaaattatgcaatc 17582837  T
Q  123 aaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgc 196  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||  |||| | ||||||||||  |||||||||    
T  17582836 aaaagtataaccaacataaagctaatcattctcaatttattcttcacaaaagctatgtactcaatgacggattgc 17582762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 17590832 - 17590628
Alignment:
Q  34 aaaagaaaatcatcaaattagactttgaaccattttctataataaaata---------aagagattt-tatgtaaggcttgttagcagatcatgcaatca 123  Q
    |||||||||||||||||||||||||||| | ||||  || |||||||||         ||||||||| | ||| |||||||||||||  | |||||| ||    
T  17590832 aaaagaaaatcatcaaattagactttgatcgatttgttagaataaaatataataaaataagagatttctttgtgaggcttgttagcaagttatgcaacca 17590733  T
Q  124 aaagtataaccaacata-agctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatgctatagcgg 222  Q
    ||||||||| ||||||| |||| |||||||| ||||||||||||  |||||| ||||||||||  ||||||||| ||| || || |||| ||||||| ||    
T  17590732 aaagtataatcaacatacagctaatcattctcaatttattcttcacaaaatctatgtactcaattacggattgcggctcgccccgaaaacgctatagtgg 17590633  T
Q  223 tatag 227  Q
    |||||    
T  17590632 tatag 17590628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 793 - 894
Target Start/End: Original strand, 347108 - 347209
Alignment:
Q  793 tcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaaaatccattggaccacctgctaccag 892  Q
    ||||||||||||   ||||||||| |||||||||||  |||| ||||| |||| || |||||| | | ||||| |||||||||||||||| ||||| |||    
T  347108 tcaccttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatcatagtttatcccaaatccattggaccacgtgctatcag 347207  T
Q  893 gt 894  Q
    ||    
T  347208 gt 347209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 793 - 847
Target Start/End: Original strand, 347336 - 347390
Alignment:
Q  793 tcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaaga 847  Q
    |||||||| ||| ||||||||||| ||||||||||||||||| ||||| ||||||    
T  347336 tcaccttagaagccagttttgtaaggttgagttaggttcaacccaaattctaaga 347390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 800
Target Start/End: Complemental strand, 17590077 - 17590027
Alignment:
Q  750 atgaaataaagcctaaatatgagtatataattgggggcattcgtcacctta 800  Q
    |||| ||||||||||||||||||||||||| |||||||| || ||||||||    
T  17590077 atgagataaagcctaaatatgagtatataagtgggggcactcctcacctta 17590027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 775 - 828
Target Start/End: Complemental strand, 31294026 - 31293973
Alignment:
Q  775 tataattgggggcattcgtcaccttacaagtcagttttgtaaagttgagttagg 828  Q
    ||||| || ||||| || |||| |||||||||||||||||||||||||||||||    
T  31294026 tataagtgagggcaatcctcactttacaagtcagttttgtaaagttgagttagg 31293973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 894
Target Start/End: Original strand, 38733188 - 38733283
Alignment:
Q  800 acaagtcagttttgtaaagttgagttaggttcaac-acaaatcctaagatattatcagaatctatccaaaatccattggaccacctgctaccaggt 894  Q
    ||||||| ||||||| |  ||| |||||||||||| || | | |||||||  ||||||| ||| ||||| |||||||||||||||||||| |||||    
T  38733188 acaagtcggttttgtgagattgtgttaggttcaaccacgatttctaagatggtatcagagtctctccaagatccattggaccacctgctatcaggt 38733283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 836 - 897
Target Start/End: Original strand, 346926 - 346987
Alignment:
Q  836 caaatcctaagatattatcagaatctatccaaaatccattggaccacctgctaccaggtcac 897  Q
    ||||| |||| || |||||||  ||||||| || ||||||||||||||||||| ||||||||    
T  346926 caaattctaatatgttatcagggtctatcccaattccattggaccacctgctatcaggtcac 346987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 467 - 596
Target Start/End: Complemental strand, 32761949 - 32761820
Alignment:
Q  467 ctcttcactactagacctcatttgttatgcatctatctctgtttctccccaagtgttttgtgtctctatagggacatcttggttctacattcttttctgt 566  Q
    ||||||||||||||||||||||||| | ||||||||||  ||||||||| ||||||| |||||||||||| | ||| |||| || | ||||||||  |||    
T  32761949 ctcttcactactagacctcatttgtaaagcatctatcttcgtttctccctaagtgttatgtgtctctatatgaacaacttgattatccattctttcatgt 32761850  T
Q  567 ttcctactaagccgcataagattaggaggg 596  Q
    ||||||| ||||| ||||||||||||||||    
T  32761849 ttcctacaaagccacataagattaggaggg 32761820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 28474292 - 28474144
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaagagattttatgtaaggcttgttagcagatcatgcaatca 123  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||  || |||||||| ||||||||   |||||||||||||||||  |  || |||||    
T  28474292 attgcaacataaaagaaaatcatcaaattatactttgaaccatttgttagaataaaat-aagagattcattgtaaggcttgttagcaagttttgtaatca 28474194  T
Q  124 aaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaa 172  Q
    |||||||||||||||| ||| | |||||||| ||| ||||||||| ||||    
T  28474193 aaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaa 28474144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 32739537 - 32739361
Alignment:
Q  14 atcacactgaattgcaacaaaaaag-aaaatcatcaaattagactttgaaccattttctataataaaataaag----agattt-tatgtaaggcttgtta 107  Q
    ||||||||| |||||| |||||||  |||| ||||||||| |||||||||||| || ||||||||||||||||    | |||| | | ||||||||||||    
T  32739537 atcacactgtattgcagcaaaaaaacaaaaccatcaaattcgactttgaaccaattgctataataaaataaagtaagacatttctttataaggcttgtta 32739438  T
Q  108 gcagatcatgcaatcaaaagtataaccaacataagctgatcattcttaatttattcttcttaaaatcaatgtactcaa 185  Q
    |||  | || | ||||||||||||||||||| ||||| ||||| || | |||||||||||||||||| ||||||||||    
T  32739437 gcaagttatacgatcaaaagtataaccaaca-aagctaatcatactaagtttattcttcttaaaatctatgtactcaa 32739361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 32558523 - 32558682
Alignment:
Q  18 cactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag----agattt-tatgtaaggcttgttagcaga 112  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||||||   || ||||||||||||    |||||| | || ||||||||||||||      
T  32558523 cactgaattgcaacataaaagatagtcatcaaattagactttgaaccattaggtagaataaaataaagtaagagatttctttgcaaggcttgttagcatg 32558622  T
Q  113 tcatgcaatcaaaagtataaccaaca-taagctgatcattcttaatttattcttcttaaa 171  Q
    || |||||||||||||||||||||||  || || |||||||| || || |||||||||||    
T  32558623 tcgtgcaatcaaaagtataaccaacacaaaactaatcattctcaaatttttcttcttaaa 32558682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 32656720 - 32656902
Alignment:
Q  15 tcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa---------gagattt-tatgtaa-ggctt 103  Q
    |||||||| |||||||||||||||||||  ||||||||| ||  |||||||||| ||| |||||||||||         || |||| ||||||| |||||    
T  32656720 tcacactgcattgcaacaaaaaagaaaacaatcaaattatacaatgaaccatttgctagaataaaataaaataaaataggacatttctatgtaaaggctt 32656819  T
Q  104 gttagcagatcatgcaatcaaaagtataaccaacata-agctgatcattcttaatttattcttcttaaaatcaatgtactcaa 185  Q
    |||||||   |||||||| |||||||||||||||||| || | |||||||| ||||||||||||| |||||||||| ||||||    
T  32656820 gttagcaagccatgcaattaaaagtataaccaacatatagttaatcattctcaatttattcttctcaaaatcaatgaactcaa 32656902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32652464 - 32652533
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataa 83  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  32652464 atcacactgaattgcaacataaaagaaaatcatcaagttagactttgaaccatttactaaaataaaataa 32652533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 32660831 - 32660899
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata 82  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||    
T  32660831 atcacactgaattgcaacaaaaaagaaactcatcaaattagacgttgaaccatttgctagaataaaata 32660899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 32857590 - 32857482
Alignment:
Q  115 atgcaatcaaaagtataaccaacataa-gctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatg 213  Q
    |||||| |||||||||||||||||||| ||| || ||||| ||||||||||||| |||||| ||||||||||  | ||||||| ||| || | ||||| |    
T  32857590 atgcaagcaaaagtataaccaacataaagctaattattctcaatttattcttctcaaaatctatgtactcaacgatggattgcggctggccctcaaaacg 32857491  T
Q  214 ctatagcgg 222  Q
    || ||||||    
T  32857490 ctctagcgg 32857482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 632 - 731
Target Start/End: Original strand, 32661409 - 32661507
Alignment:
Q  632 taatttaaaaactcttgattgtaatgatgtacctccaatatccatcctgcattttctaattaatagttgataatacttactttaccctctaaagtgaatt 731  Q
    |||||||||||||||||||||| |||| | ||||| |  |||||||||  || ||||| ||| | |||||||||| ||||||||||||||||||| ||||    
T  32661409 taatttaaaaactcttgattgttatgaagcacctctagcatccatccttaatgttcta-ttattggttgataatatttactttaccctctaaagtaaatt 32661507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 32662606 - 32662676
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa 84  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||  ||||||||| ||| |||||||||||    
T  32662606 atcacactgtagtgcaacataaaagaaaataatcaaattagactaagaaccatttgctagaataaaataaa 32662676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 779
Target Start/End: Complemental strand, 32738924 - 32738743
Alignment:
Q  602 ctcctttaaagtgagaaaatcaagtattgctaatttaaaaactcttgattgtaatgatgtacctccaatatccatcctgcattttctaattaatagttga 701  Q
    ||||| ||||| ||||||||||||  |   |||||||||||||||||||||| ||||||||  |  |||||  |||||  ||||| | ||||| ||||||    
T  32738924 ctcctctaaagcgagaaaatcaagcttcattaatttaaaaactcttgattgttatgatgtaaatataatatt-atccttaattttgtgattaacagttga 32738826  T
Q  702 taatacttactttaccctctaaagtgaattctatgttaattg-----cattaaatgaaataaagcctaaatatgagtatataa 779  Q
    |||||||||||||| | |||||||||  ||   ||| || ||     ||||  ||||||||||||||||||||||||||||||    
T  32738825 taatacttactttatcttctaaagtggtttacttgtcaagtgtctcacatttgatgaaataaagcctaaatatgagtatataa 32738743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 25469034 - 25468977
Alignment:
Q  5 atggacatcatcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaa 62  Q
    |||| ||| ||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  25469034 atggccattatcacactgaattgcaacaaaaaaataaaccatcaaattagactttgaa 25468977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 32762432 - 32762222
Alignment:
Q  24 attgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaata----aagagat-tttatgtaaggcttgttagc-agatcatg 117  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||  || |||||||||    ||||||| | | ||||||| |||  ||| || | |||    
T  32762432 attgcaacataaaagcaaatcatcaaattagagtttgaaccatttgttagaataaaataaaataagagatgtctttgtaaggattgaaagcaagtttatg 32762333  T
Q  118 caatcaaaagtataaccaacat-aagctgatcattcttaatttattcttcttaaaatcaatgtactcaaaaacggattgcagcttgcacccaaaatgcta 216  Q
     ||||||||||||||| | ||| ||||| |||||| | ||| |||| |||| |||||  ||||||||||  ||||||||||  | ||  |||||| ||||    
T  32762332 aaatcaaaagtataacaaccataaagctaatcattttcaatatattattctcaaaatttatgtactcaatgacggattgcaaatagcctccaaaacgcta 32762233  T
Q  217 tagcggtatag 227  Q
    |||||| ||||    
T  32762232 tagcggcatag 32762222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 25477336 - 25477214
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatc-atcaaattagactttgaaccattttctataataaaataaagagattt-tatgtaaggcttgttagcag 111  Q
    |||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||||||| || | || ||| | |||| | |||||||||||||||||     
T  25477336 atcacactaaattgcaacaaaaaaaaaaacccatcaaattagactttgaagcattttctagaa-agaaaaaacatatttctttgtaaggcttgttagcaa 25477238  T
Q  112 atcatgcaatcaaaagtataaccaa 136  Q
     |  ||| |||||||||||||||||    
T  25477237 gttctgc-atcaaaagtataaccaa 25477214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 693
Target Start/End: Complemental strand, 32761757 - 32761700
Alignment:
Q  636 ttaaaaactcttgattgtaatgatgtacctccaatatccatcctgcattttctaatta 693  Q
    |||||||||||||||||| ||||||| |||| |||||||||| |  ||||||||||||    
T  32761757 ttaaaaactcttgattgttatgatgttcctctaatatccatctttaattttctaatta 32761700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 32661124 - 32661215
Alignment:
Q  323 ctaatattcaaacccaatgtaaatcaaacaagtcttagcctccaaggcttaaaa-aactcatctaagcgtttaaaataattaaaagtgattc 413  Q
    ||||||| ||||||||||||||| |||| |||||| | | |||||| ||||||| ||||||||||| | |||| || ||  |||||||||||    
T  32661124 ctaatatccaaacccaatgtaaagcaaataagtctgaacttccaagacttaaaagaactcatctaatcatttataacaaacaaaagtgattc 32661215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 32767350 - 32767287
Alignment:
Q  14 atcacactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataata 77  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||| | || || ||||||||    
T  32767350 atcacactgaattgaaacaaaaatgaaattcattaaattagactttggaacagttgctataata 32767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 32857699 - 32857635
Alignment:
Q  19 actgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaa 84  Q
    |||||| ||||||||||||| || ||| |||||||||| ||||||||||| ||| |||| ||||||    
T  32857699 actgaaatgcaacaaaaaaggaa-tcagcaaattagacgttgaaccatttgctagaatataataaa 32857635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 793 - 845
Target Start/End: Complemental strand, 38036061 - 38036009
Alignment:
Q  793 tcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaa 845  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||    
T  38036061 tcaccttacaagtcggttttgtaaagttgagttaagttcaacccaaattctaa 38036009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 793 - 883
Target Start/End: Complemental strand, 50187456 - 50187366
Alignment:
Q  793 tcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaaaatccattggaccacc 883  Q
    ||||||||||||||||||| |||| |||||||||||  |||| ||||| |||||||   |   || ||||||||| |||||||||||||||    
T  50187456 tcaccttacaagtcagtttagtaaggttgagttaggcccaactcaaattctaagatggcagttgagtctatccaagatccattggaccacc 50187366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 787 - 867
Target Start/End: Original strand, 7252230 - 7252310
Alignment:
Q  787 cattcgtcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaa 867  Q
    ||||| ||| |||||||||  ||||||||  ||||||||||| ||||| ||||| |||||||  ||||||||||| |||||    
T  7252230 cattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcagaatctgtccaa 7252310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 16751919 - 16751851
Alignment:
Q  17 acactgaattgcaacaaaaaagaaaatcatcaaattagactttgaaccattttctataataaaataaag 85  Q
    |||||||||| ||||| ||| | |||||| ||||||||||||||||||||||  || | ||||||||||    
T  16751919 acactgaatttcaacataaatgtaaatcaccaaattagactttgaaccatttgatagagtaaaataaag 16751851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 827
Target Start/End: Complemental strand, 33277592 - 33277558
Alignment:
Q  793 tcaccttacaagtcagttttgtaaagttgagttag 827  Q
    |||||||||||||||||||||||||| ||||||||    
T  33277592 tcaccttacaagtcagttttgtaaagatgagttag 33277558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 867
Target Start/End: Original strand, 24001526 - 24001601
Alignment:
Q  792 gtcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaa 867  Q
    ||||||| || || ||||||||||| ||||||||| |  |||| ||||| |||||||| ||||||| |||||||||    
T  24001526 gtcacctcactagacagttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtctatccaa 24001601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 25398390 - 25398468
Alignment:
Q  325 aatattcaaacccaatgtaaatcaaacaagtctt--agcctccaaggcttaaaa-aactcatctaagcgtttaaaataa 400  Q
    |||||||||||||||| ||||||||| |||| ||  ||||| ||||  |||||| ||||||||||||| ||||||||||    
T  25398390 aatattcaaacccaatataaatcaaataagttttagagccttcaagatttaaaacaactcatctaagcatttaaaataa 25398468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 810 - 887
Target Start/End: Complemental strand, 49190215 - 49190138
Alignment:
Q  810 tttgtaaagttgagttaggttcaacacaaatcctaagatattatcagaatctatccaaaatccattggaccacctgct 887  Q
    |||||||  ||||||| || ||||| ||||| |||||||  |||||||  |||||||| |||| ||||||||||||||    
T  49190215 tttgtaagattgagtttggctcaacccaaattctaagatggtatcagagcctatccaagatccgttggaccacctgct 49190138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 29506614 - 29506676
Alignment:
Q  314 tcattgtaactaatattcaaacccaatgtaaatcaaacaagtcttagcctccaaggcttaaaa 376  Q
    ||||||| ||||||||||||||||||  |||| |||| |||| ||||| ||| ||||||||||    
T  29506614 tcattgttactaatattcaaacccaacataaagcaaataagttttagcttcccaggcttaaaa 29506676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 775 - 845
Target Start/End: Complemental strand, 30966139 - 30966069
Alignment:
Q  775 tataattgggggcattcgtcaccttacaagtcagttttgtaaagttgagttaggttcaacacaaatcctaa 845  Q
    ||||| |||||||| || |||||||||||| | |||||||||| ||||||||||  |||| ||||| ||||    
T  30966139 tataagtgggggcagtcctcaccttacaagccggttttgtaaatttgagttaggcccaacccaaattctaa 30966069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 782 - 894
Target Start/End: Complemental strand, 3157624 - 3157511
Alignment:
Q  782 gggggcattcgtcaccttacaagtcagttttgtaaagttgagttaggttcaac-acaaatcctaagatattatcagaatctatccaaaatccattggacc 880  Q
    ||||||| || |||||| ||||| |||||||||   |||| |||||| ||||| || | |  ||||||  |||||||  || ||||||||||||||||||    
T  3157624 gggggcaatcctcacctcacaagccagttttgtggggttgtgttaggctcaaccaccatttataagatgatatcagagcctctccaaaatccattggacc 3157525  T
Q  881 acctgctaccaggt 894  Q
    |||||||| |||||    
T  3157524 acctgctatcaggt 3157511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 815
Target Start/End: Original strand, 32993507 - 32993560
Alignment:
Q  762 ctaaatatgagtatataattgggggcattcgtcaccttacaagtcagttttgta 815  Q
    ||||||||| || ||||| ||||| || || |||||||||||||||||||||||    
T  32993507 ctaaatatgtgtttataagtggggacaatcttcaccttacaagtcagttttgta 32993560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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