View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_11 (Length: 418)
Name: NF4481_low_11
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 34468164 - 34468538
Alignment:
| Q |
13 |
catcatcatagggaagtctctttcccaagtatgaatcatgatacaacttactacctcacaaactgctccatacttgcacaattcacacctctagaagtcg |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34468164 |
catcataatagggaagtctctttcccaagtatgaatcatgatacaacttactac-tcacaaactgctccatacttgcacaattcacacctctagaagtcg |
34468262 |
T |
|
| Q |
113 |
cttctggagtaacggttacctacgcgaccaagagcagaaatactagcagtaagtataattaaaaggataaagagtaattatacaaatcattcaaagtgga |
212 |
Q |
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| T |
34468263 |
cttctggagtaacggttacctacgcgaccaagagcag------------taagtataattaaaaggataaagagtaattatacaaatcattcaaagtgga |
34468350 |
T |
|
| Q |
213 |
acttacatcatactgatgaaggtccttccttttaaggtaactcgggnnnnnnntggtt-gccataacaacacatatcttgccatagctcccctttccgga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34468351 |
acttacatcatactgatgaaggtccttccttttaaggtaactcgggaaaaaaatggtttgccataacaacacatatcttgccatagctcccctttccgga |
34468450 |
T |
|
| Q |
312 |
gcgaaagggaaacgtcggcgatgatttactttgtggaggaggggaatgagtctccagaatgaaatgtcatttgtcccagatcctgttc |
399 |
Q |
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| T |
34468451 |
gcgaaagggaaacgtcggcgatgatttactttgtggaggaggggaatgagtctccagaatgaaatgtcatttgtcccagatcctgttc |
34468538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 34522022 - 34522241
Alignment:
| Q |
8 |
atggacatcatcatagggaagtctctttcccaagtatgaatcatgatacaacttactacctcacaaactgctccatacttgcacaattcacacctctaga |
107 |
Q |
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| T |
34522022 |
atggccatcataatagggaagtctctttcccaagtatgaatcatgatacagc-------ctcagaagttgttccataacaacacaattcacacctctaga |
34522114 |
T |
|
| Q |
108 |
agtcgcttctggagtaacggttacctacgcgaccaagagcagaaatactagcagtaagtataattaaaaggataaa----gagtaattatacaaatcatt |
203 |
Q |
| |
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||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34522115 |
cgtctcttctggagtaattgttacctacgcaaccaagagcagaaatactagcaataagtataattaaaaggataaacagtaagtaattatacaaatcatt |
34522214 |
T |
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| Q |
204 |
caaagtggaacttacatcatactgatg |
230 |
Q |
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| T |
34522215 |
gaaagtggaacttacatcatactgatg |
34522241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 27629395 - 27629608
Alignment:
| Q |
8 |
atggacatcatcatagggaagtctctttcccaagtatgaatcatgatacaacttactacctcacaaactgctccatacttgcacaattcacacctctaga |
107 |
Q |
| |
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|||| |||||| || || |||||||||||||||||||||||||||||||| | ||||||| |||||||||| | ||||| ||||||||||| | |
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| T |
27629395 |
atggccatcataattggaaagtctctttcccaagtatgaatcatgatacagc-------ctcacaagctgctccataatagcacagatcacacctctata |
27629487 |
T |
|
| Q |
108 |
agtcgcttctggagtaacggttacctacgcgaccaagagcagaaatactagcagtaagtataattaaaaggataaa----gagtaattatacaaatcatt |
203 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
27629488 |
agtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacagtaagtaattatacaaattatt |
27629587 |
T |
|
| Q |
204 |
caaagtggaacttacatcata |
224 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27629588 |
gaaagtggaacttacatcata |
27629608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 34487890 - 34488039
Alignment:
| Q |
89 |
cacaattcacacctctagaagtcgcttctggagtaacggttacctacgcgaccaagagcagaaatactagcagtaagtataattaaaaggataaa----g |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
34487890 |
cacaattcacacctctagaagtcgcttatggagtaattgttacctacacaaccaagagaagaaatactagcaataagtataattaaaaggataaacagta |
34487989 |
T |
|
| Q |
185 |
agtaattatacaaatcattcaaagtggaacttacatcatactgatgaagg |
234 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34487990 |
agtaattatacaaatcattgaaagtggaacttacatcataccgatgaagg |
34488039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 27623125 - 27623163
Alignment:
| Q |
193 |
tacaaatcattcaaagtggaacttacatcatactgatga |
231 |
Q |
| |
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| T |
27623125 |
tacaaatcattgaaagtggaacttacatcatactgatga |
27623163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 34509224 - 34509262
Alignment:
| Q |
193 |
tacaaatcattcaaagtggaacttacatcatactgatga |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
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| T |
34509224 |
tacaaatcattgaaagtggaacttacatcatactgatga |
34509262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 34488078 - 34488200
Alignment:
| Q |
272 |
ccataacaacacatatcttgccatagctcccctttccggagcgaaagggaaacgtcggcgatgatttactttgtggaggaggggaatgagtctc--caga |
369 |
Q |
| |
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||||||||||||| ||||||||||||| |||||||| ||| ||||||| |||| | ||||||| |||||||| || || ||| ||||| ||| |
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| T |
34488078 |
ccataacaacacacttcttgccatagctgccctttccaagaagaaggggaaacctcggtaaagatttacgttgtggagaagaggcatgcgtctcttaaga |
34488177 |
T |
|
| Q |
370 |
atgaaatgtcatttgtcccagat |
392 |
Q |
| |
|
|||||||||||||||||| |||| |
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| T |
34488178 |
atgaaatgtcatttgtcctagat |
34488200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 34522281 - 34522320
Alignment:
| Q |
269 |
ttgccataacaacacatatcttgccatagctcccctttcc |
308 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34522281 |
ttgccataacaacacacttcttgccatagctcccctttcc |
34522320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 34522344 - 34522414
Alignment:
| Q |
331 |
gatgatttactttgtggaggaggggaatgagtctcc--agaatgaaatgtcatttgtcccagatcctgttc |
399 |
Q |
| |
|
||||||||||||||||||| || || ||| ||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
34522344 |
gatgatttactttgtggagaagaggcatgcgtctcttaagaatgaaatgtcatttgtcctagatcttgttc |
34522414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 34509298 - 34509384
Alignment:
| Q |
269 |
ttgccataacaacacatatcttgccatagctcccctttccggagcgaaagggaaacgtcggcgatgatttactttgtggaggagggg |
355 |
Q |
| |
|
|||||||||||||||| ||| | |||| ||||| ||||| | | ||| ||||||| | | ||||||||||||||||||||||||| |
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|
| T |
34509298 |
ttgccataacaacacacttctggtcataactcccttttccagggagaaggggaaaccttagtgatgatttactttgtggaggagggg |
34509384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 27623261 - 27623293
Alignment:
| Q |
331 |
gatgatttactttgtggaggaggggaatgagtc |
363 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
27623261 |
gatgatttactttgtggaggaggggcatgagtc |
27623293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 28762182 - 28762149
Alignment:
| Q |
207 |
agtggaacttacatcatactgatgaaggtccttc |
240 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
28762182 |
agtggaacttacatcatactgatgaagatccttc |
28762149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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