View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_12 (Length: 411)
Name: NF4481_low_12
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 27 - 398
Target Start/End: Complemental strand, 55175516 - 55175145
Alignment:
| Q |
27 |
tcaccactttttgtttcatttaaatctgcaacagagtcacagtcgttaagtttttcaaaatgcaaattttggctttcatccattctcatccaatttatca |
126 |
Q |
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| T |
55175516 |
tcaccactttttgtttcattgaaatctgcaacagagtcacagtcgttaagtttttcaaaatgcaaattttggctttcatccattctcatccaatttatca |
55175417 |
T |
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| Q |
127 |
atggcttttctgaattaatctctttaggaacaatggcttcagtatcatcaggcctgtactcacttttgaaaatattcatattctctatttcatcatccac |
226 |
Q |
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| T |
55175416 |
atggcttttctgaattaatctctttaggaacaatggcttcagtattgtcaggcttgtactcacttttgaaaatattcatattctctatttcatcatccac |
55175317 |
T |
|
| Q |
227 |
catttcattctttttccttttgaaattcttgaagcttcttgcaacagcatgctgattattttcctgatatgacggttaagttttttacttttaatgagag |
326 |
Q |
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| T |
55175316 |
catttcattctttttccttttgaaattcttgaagcttcttgcaacagcatgctgattattttcctgatatgacggttaagttttttacttttaatgagag |
55175217 |
T |
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| Q |
327 |
nnnnnnncagatgaaaactacaacaatcagggaacataaattaaataggaataatgataatatagttgatga |
398 |
Q |
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| T |
55175216 |
aaaaaaacagatgaaaactacaacaatcagggaacataaattaaataggaataatgataatatagttgatga |
55175145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 50907256 - 50907166
Alignment:
| Q |
168 |
gtatcatcaggcctgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttga |
258 |
Q |
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| T |
50907256 |
gtatcatcaggcttgtactcacttttgaaaatattcatattctctattacatcgtccaccatttcattcattttccttttgaaattcttga |
50907166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 50907120 - 50907069
Alignment:
| Q |
337 |
atgaaaactacaacaatcagggaacataaattaaataggaataatgataata |
388 |
Q |
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| T |
50907120 |
atgaaaagtacgacaatcagggaacataaattaaatagaaataatgataata |
50907069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 17204515 - 17204424
Alignment:
| Q |
167 |
agtatcatcaggcctgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttga |
258 |
Q |
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| T |
17204515 |
agtatcttcaggcttgtactcacgtttgaaaatattcatattctctgttacatcatttaccatttcattcgttttccttttgaaattcttga |
17204424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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