View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4481_low_15 (Length: 335)
Name: NF4481_low_15
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 45 - 317
Target Start/End: Original strand, 246880 - 247154
Alignment:
| Q |
45 |
agataatatagtaaacatagtgt--ttattttctggtggtgatggaggtatacgtatgatattacattagttcattttgaatgctatccactccgaccac |
142 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
246880 |
agataatatagtaaacatagtgtatttattttctggtggtgatggaggtatacgtatgatattacattagttcattttgaatgccatccactccgaccac |
246979 |
T |
|
| Q |
143 |
aatagctagcaataacatgaattagaaaacatgattagtttctgaagtaacaggtctcggagaaggtggcagcgccatcaggaacatcttccattaccca |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
246980 |
aatagctagcaataacatgaattagaaaacatgattagtttctgaagtaacaggtctcggagaaggtggcagcaccatcaggaacatcttccattaccca |
247079 |
T |
|
| Q |
243 |
ttcatggccaacagggaagtaaattccagtccttgggtgtggaacccagcaacttgaatatgatgatgttgaatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
247080 |
ttcatggccaacagggaagtaaattccagtccttgggtgtggaacccagcaacttgaatatgatgatgttgaatc |
247154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University