View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_16 (Length: 322)
Name: NF4481_low_16
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 31389470 - 31389771
Alignment:
| Q |
7 |
agagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaatacaata |
106 |
Q |
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| T |
31389470 |
agagaagagaaaggtcgaacagaatgctgaattcaaaaatacttaaaaggattacaagaaggatagcaacttacataaaagagaatttaaaaatacaata |
31389569 |
T |
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| Q |
107 |
tcaattacaaatatcatacattttttaaggacaagtgt-gtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtcttcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389570 |
tcaattacaaatatcatacattttttaaggacaagtgttgtatatttttcagacacaaattagagactcttaacttctaatgactttaccatgtcttcaa |
31389669 |
T |
|
| Q |
206 |
caattcttgcaattgtccatgactccattattgctcctcgacaaacaactaatcattacaccctatggattaaatgagagttgccaatcttctttgaaaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31389670 |
caattcttgcaattgtccatgactccattattgctccccgacaaacaactaattattacaccctatggattaaatgagagttgccaatcttctttcaaaa |
31389769 |
T |
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| Q |
306 |
ct |
307 |
Q |
| |
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|| |
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| T |
31389770 |
ct |
31389771 |
T |
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