View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_17 (Length: 316)
Name: NF4481_low_17
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 300
Target Start/End: Complemental strand, 36059619 - 36059334
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttcagag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36059619 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtaccctgcagag |
36059520 |
T |
|
| Q |
115 |
ccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgatactgatggggcttgtt |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36059519 |
ccatccttggaaggataacccataggtggtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgatactgatggggcttttt |
36059420 |
T |
|
| Q |
215 |
gctgattgttgtttaattgactcatgatattgaactgatgatgaagttactattatcgaagaggggaacgatcaaagagtatatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36059419 |
gctgattgttgtttaattgactcatgatattgaactgatgatgaagttactattatcgaagaggtgaacgatcaaagagtatatat |
36059334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 28862652 - 28862859
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttcagag |
114 |
Q |
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|||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||| |||| |
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| T |
28862652 |
ggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatcttttgttgagggtacccttgagag |
28862751 |
T |
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| Q |
115 |
ccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgatactgatggggcttgtt |
214 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| | | || |||||| ||||||| |||||||||||||||| ||||||||||| |
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| T |
28862752 |
ccatccttggaaggataacccataggtggtggggcagttacatatggtgctgaagaataaccctcaccttgtggtggatatgatac---tggggcttgtt |
28862848 |
T |
|
| Q |
215 |
gctgattgttg |
225 |
Q |
| |
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||||||||||| |
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| T |
28862849 |
gctgattgttg |
28862859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 28865591 - 28865391
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttcagag |
114 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||| |||| |
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| T |
28865591 |
ggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatcttttgttgagggtacccttgagag |
28865492 |
T |
|
| Q |
115 |
ccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgatactgatggggcttgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||| |||| |||||||||||||||| ||||| ||||| |
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| T |
28865491 |
ccatccttggaaggataacccataggtggtggggcagttacatatggagctgaagaataagcct------gtggtggatatgatac---tggggtttgtt |
28865401 |
T |
|
| Q |
215 |
gctgattgtt |
224 |
Q |
| |
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|||||||||| |
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| T |
28865400 |
gctgattgtt |
28865391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 28859389 - 28859353
Alignment:
| Q |
43 |
catcctttccagaaaccatcacccctgctagtggttt |
79 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
28859389 |
catcctttccagaaaccatcacccctgctagttgttt |
28859353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 15099628 - 15099441
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttca--- |
111 |
Q |
| |
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|||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||| |||||| |
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| T |
15099628 |
ggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatcctttggttagggtatccttcagct |
15099529 |
T |
|
| Q |
112 |
gagccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgata |
199 |
Q |
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| T |
15099528 |
ggaccatcttttgtagggtaacccataggtggtggggcagtaacatatggagatgtagaataggtctcacctggtggtggatatgata |
15099441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 15110863 - 15110676
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttca--- |
111 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||| | ||||| |||||| |
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| T |
15110863 |
ggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatcctttggttagggtatccttcagct |
15110764 |
T |
|
| Q |
112 |
gagccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgata |
199 |
Q |
| |
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| ||||| || | ||| |||||||||||| |||||||||| |||||| ||| ||||||||||| |||||| |||||||||||||||| |
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| T |
15110763 |
ggaccatcttttgtagggtaacccataggtggtggggcagtaacatatggagatgtagaataggtctcacctggtggtggatatgata |
15110676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 18616821 - 18617008
Alignment:
| Q |
15 |
ggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctttgttgggggtacccttca--- |
111 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||| | ||||| |||||| |
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| T |
18616821 |
ggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatcctttggttagggtatccttcagct |
18616920 |
T |
|
| Q |
112 |
gagccatccttggaaggataacccataggtagtggggcagttacatattgaggtgtagaataggcctcaccaggtggtggatatgata |
199 |
Q |
| |
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| ||||| || | ||| |||||||||||| |||||||||| |||||| ||| ||||||||||| |||||| |||||||||||||||| |
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| T |
18616921 |
ggaccatcttttgtagggtaacccataggtggtggggcagtaacatatggagatgtagaataggtctcacctggtggtggatatgata |
18617008 |
T |
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