View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_18 (Length: 302)
Name: NF4481_low_18
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 40126481 - 40126749
Alignment:
| Q |
16 |
catgaacatgaacatgacaataattatgaacatccttgtcctcatcttcaccaccctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126481 |
catgaacatgaacatgacaataattatgaacatcctcgtcctcatcttcaccactctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
40126580 |
T |
|
| Q |
116 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126581 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
40126680 |
T |
|
| Q |
216 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggact |
284 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126681 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggact |
40126749 |
T |
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