View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_19 (Length: 298)
Name: NF4481_low_19
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 1184862 - 1184622
Alignment:
| Q |
19 |
caagcagtgataaacattgttgttgtgaacccgttagggtcttcagaagtgtttccaattcctttggatgaaaataaagagagtattgaagacgtgatta |
118 |
Q |
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| T |
1184862 |
caagcagtgataaacattgttgttgtgaacccgttagggtcttcagaagtgtttccaattcctttggatgaaaataaagagagtattgaagacgtgatta |
1184763 |
T |
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| Q |
119 |
accaacagtttcaaataaagaaagtaggcgaggaagatgcaaaagagaagcatcacaacaacgtggaagctatagaatttcaatgcgtgctgtgaaagtg |
218 |
Q |
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| T |
1184762 |
accaacaatttcaagtaaagaaagtaggtgaggaagatgcaaaagagaagcatgacaacaacgtggaagctatagaatttcaatgcgtggtgtaaaagtg |
1184663 |
T |
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| Q |
219 |
tgaccatattatatactctctcactgttttgtgaaagaaag |
259 |
Q |
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| T |
1184662 |
tgaccatattatatactctctcactgttttgtgaaagaaag |
1184622 |
T |
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