View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_23 (Length: 247)
Name: NF4481_low_23
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 9358395 - 9358171
Alignment:
| Q |
19 |
aagaacttttaaaccatataatggaagactaattaataccttgcttgattatagtatttcagacgggataagcaattcactaacttcaactttctttggt |
118 |
Q |
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| T |
9358395 |
aagaacttttaaaccatataatggaagactaattaataccttgcttgattatagtatttctgacgggataagcaattcactaacttcaattttctttggt |
9358296 |
T |
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| Q |
119 |
ttactctcatggccactttaagtcttctttttctaattctgcacactgatagactaacatcctttacatcttcaggttcttccaaatccaatacaatatg |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9358295 |
ttactctcatggccactctaagtcttctttttctaattctgcatactgatagactaacatcctttacatcttcaggttcttccaaatccaagacaatatg |
9358196 |
T |
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| Q |
219 |
gtcattacacgcattcatctcactc |
243 |
Q |
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||||||||| |||| ||| |||||| |
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| T |
9358195 |
gtcattacatgcatccatgtcactc |
9358171 |
T |
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