View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4481_low_26 (Length: 218)

Name: NF4481_low_26
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4481_low_26
NF4481_low_26
[»] chr6 (4 HSPs)
chr6 (18-203)||(12785701-12785886)
chr6 (18-203)||(12781511-12781696)
chr6 (115-203)||(12792002-12792090)
chr6 (78-195)||(12782270-12782387)
[»] chr4 (7 HSPs)
chr4 (73-199)||(31160039-31160165)
chr4 (73-199)||(31529298-31529424)
chr4 (71-199)||(31030518-31030646)
chr4 (71-199)||(31020637-31020765)
chr4 (71-199)||(31151141-31151268)
chr4 (71-199)||(31488787-31488915)
chr4 (71-199)||(31496142-31496270)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 12785886 - 12785701
Alignment:
Q  18 aaatattatgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 117  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785886 aaatattctgggttgcaagttttcaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 12785787  T
Q  118 ttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12785786 ttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcagagatgacactaaacttaaaaaaggtgaattcat 12785701  T

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Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 12781696 - 12781511
Alignment:
Q  18 aaatattatgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12781696 aaatattttgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 12781597  T
Q  118 ttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 203  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12781596 ttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcagagatgacactaaacttaaaaaaggcgaattcat 12781511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 12792090 - 12792002
Alignment:
Q  115 aatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 203  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||| |||| |||||| ||||| || |||||||||||||||||||||||    
T  12792090 aatttcaccgatcatctttttgctgccctacaaagaagagacataaatgaattcagagatgatacaaaacttaaaaaaggtgaattcat 12792002  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 12782387 - 12782270
Alignment:
Q  78 cgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgac 177  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  |||||||||||| |||||| ||||||  | | |||  | ||||||| ||||||    
T  12782387 cgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgac 12782288  T
Q  178 actaaacttaaaaaaggt 195  Q
    ||||| ||| ||||||||    
T  12782287 actaatcttcaaaaaggt 12782270  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 31160165 - 31160039
Alignment:
Q  73 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcaggg 172  Q
    |||||||| ||||||||||||||||||| |||||||| |  ||||||  || ||||||||||||||||||| ||||||  ||||||   |||||||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  173 atgacactaaacttaaaaaaggtgaat 199  Q
    ||||  |||| || || ||||||||||    
T  31160065 atgattctaacctgaagaaaggtgaat 31160039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 31529424 - 31529298
Alignment:
Q  73 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcaggg 172  Q
    |||||||||||| | ||||| |||||  |||||||||| ||||| |||||  ||||||||||| | ||||| |||| | ||||||||  |||||| || |    
T  31529424 tatgacgtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagag 31529325  T
Q  173 atgacactaaacttaaaaaaggtgaat 199  Q
    |||||||||| ||||| ||||||||||    
T  31529324 atgacactaagcttaagaaaggtgaat 31529298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 31030646 - 31030518
Alignment:
Q  71 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 170  Q
    ||||||| |||||||| | ||||||||||  ||| || |||||||| ||||   ||||||||||||||||||| ||||||  |||||||  |||||| ||    
T  31030646 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31030547  T
Q  171 ggatgacactaaacttaaaaaaggtgaat 199  Q
     || |||||||| ||| ||||||||||||    
T  31030546 agacgacactaatcttcaaaaaggtgaat 31030518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 31020765 - 31020637
Alignment:
Q  71 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 170  Q
    ||||||| |||||||| | ||||||||||  ||| || |||||||| ||||   ||||||||||||||||||| ||||||  |||||||  |||||| ||    
T  31020765 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31020666  T
Q  171 ggatgacactaaacttaaaaaaggtgaat 199  Q
     || ||| |||| ||| ||||||||||||    
T  31020665 agacgacgctaatcttcaaaaaggtgaat 31020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 31151268 - 31151141
Alignment:
Q  71 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 170  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| |||||  ||||||||||||||||||| ||||||  |  ||||  | |||||||    
T  31151268 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaaga-aaatcattttttcattcag 31151170  T
Q  171 ggatgacactaaacttaaaaaaggtgaat 199  Q
    |||||| ||||| || || ||||||||||    
T  31151169 ggatgatactaagctgaagaaaggtgaat 31151141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 31488787 - 31488915
Alignment:
Q  71 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 170  Q
    |||||||||||||||| | ||| |||||   ||| || |||||||| || ||  ||||||||||||||||||| ||||||  |||||||  ||| || ||    
T  31488787 attatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgtttag 31488886  T
Q  171 ggatgacactaaacttaaaaaaggtgaat 199  Q
     ||||||||||| ||| ||||||||||||    
T  31488887 agatgacactaagcttcaaaaaggtgaat 31488915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 31496142 - 31496270
Alignment:
Q  71 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 170  Q
    |||||||||||||||| | |||||||||    ||||| |||  |||||||||  |||||||||||| | || | || |||  |||||||  |||||| ||    
T  31496142 attatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttag 31496241  T
Q  171 ggatgacactaaacttaaaaaaggtgaat 199  Q
     ||||||||||| |||  |||||||||||    
T  31496242 agatgacactaatcttccaaaaggtgaat 31496270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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