View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_4 (Length: 614)
Name: NF4481_low_4
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 11 - 596
Target Start/End: Complemental strand, 35673808 - 35673223
Alignment:
| Q |
11 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
110 |
Q |
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| T |
35673808 |
cacagaaacccatccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaa |
35673709 |
T |
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| Q |
111 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
210 |
Q |
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| T |
35673708 |
ccgggtttatttcctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatca |
35673609 |
T |
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| Q |
211 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
310 |
Q |
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| T |
35673608 |
acacatcaataatattcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtc |
35673509 |
T |
|
| Q |
311 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttga |
410 |
Q |
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| T |
35673508 |
gaactggaaccggaacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttga |
35673409 |
T |
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| Q |
411 |
tcatgtgaaaggttgaagagtttgagtgactctgactcagccaagttggcgagttttgaagaaactgagtgatcagtgaattgaataaaaccaagttgag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35673408 |
tcatgtgaaaggttgaagagtttgagtgactctgactcagccaagttggcaagttttgaagaaactgagtgatcagtgagttgaataaaaccaagttgag |
35673309 |
T |
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| Q |
511 |
aaatggaggagatgagtttttctggtgtgagtgatgaaaaggagagagaaggaggagaggtggtggttggagaggatcggcggatg |
596 |
Q |
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| T |
35673308 |
aaatggaggagatgagtttttctggtgtgagtgatgaaaaggagagagaaggaggagaggtggtggttggagaggatcggcggatg |
35673223 |
T |
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