View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_5 (Length: 560)
Name: NF4481_low_5
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 283 - 488
Target Start/End: Original strand, 22463765 - 22463958
Alignment:
| Q |
283 |
aaaagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctccgatttcagctaagtctaatcactggaaaactgttcgatcaagtccgg |
382 |
Q |
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| T |
22463765 |
aaaagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctcagatttcagctaagtctagtcactggaaaactgttcgatcaagtccag |
22463864 |
T |
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| Q |
383 |
aaagtactgtcgccacctctctctggttttgtaaatgagttttgttttgttgccttaca-gaggaaaagtgaatgctttgagagtagcgaagacaaagaa |
481 |
Q |
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| T |
22463865 |
aaggtactgtcaccgcctctctctg-------------gttttgttttgttgccttacaggaggaaaagtgaatgctttgagagcagcgaagacgaagaa |
22463951 |
T |
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Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 220 - 416
Target Start/End: Original strand, 33926580 - 33926775
Alignment:
| Q |
220 |
agattactccagtgaatacggcggttaacggagttgaggactctgttcaagtttccagtttgcaaaagaaagcaccgttgcagttcacgttttaacgatg |
319 |
Q |
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| T |
33926580 |
agattactccggtgaaaacaacggttgttggagttgaggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcattt-aacgatg |
33926678 |
T |
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| Q |
320 |
acaatgagaaacctccgatttcagctaagtctaatcactggaaaactgttcgatcaagtccggaaagtactgtcgccacctctctctggttttgtaa |
416 |
Q |
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| T |
33926679 |
agaatgagaaacctccgatttcagctaggtctagtcaccggaaaaccgttagatcaagtccagaaggtactgtcaccgtctctctctggttttgtaa |
33926775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 522
Target Start/End: Original strand, 33926885 - 33926959
Alignment:
| Q |
442 |
gaggaaaagtgaatgctttgagagtagcgaagacaaagaagaagaagcaagaaacattggagagtacatggaacacgataa |
522 |
Q |
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| T |
33926885 |
gaggaaaggtgaatgcgttgagagtagcgaagac------gaagaagcaggaaacattggagagtacgtggaagacgataa |
33926959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 26840424 - 26840504
Alignment:
| Q |
20 |
aaagataaggctaattggaaacataaaattcacattacagttgcacaatctttagagtaaaagagtggacattcatttcaa |
100 |
Q |
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| T |
26840424 |
aaagataaggctaattggaagcataaaattcacattacagttgcacaatctttagtgtaaaagagtggacattcatttcaa |
26840504 |
T |
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