View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4481_low_6 (Length: 497)
Name: NF4481_low_6
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 26033722 - 26033251
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033722 |
catcatcatcggtcgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
26033623 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033622 |
ggtatcgaaaaatgccgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
26033523 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033522 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt |
26033423 |
T |
|
| Q |
312 |
ttactttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttttgtgtc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033422 |
ttactttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttttgtgtc |
26033323 |
T |
|
| Q |
412 |
agttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033322 |
agttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgtg |
26033251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 38180534 - 38180979
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38180534 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacga |
38180633 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38180634 |
ggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaa |
38180733 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttactt |
308 |
Q |
| |
|
|||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
38180734 |
gaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttactt |
38180833 |
T |
|
| Q |
309 |
cttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttt |
405 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38180834 |
cttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat---------- |
38180911 |
T |
|
| Q |
406 |
tgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38180912 |
----tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaa |
38180979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 38190597 - 38190152
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38190597 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacga |
38190498 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38190497 |
ggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaa |
38190398 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatt---tcttattcatgctttactt |
308 |
Q |
| |
|
|||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
38190397 |
gaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttactt |
38190298 |
T |
|
| Q |
309 |
cttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttt |
405 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38190297 |
cttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat---------- |
38190220 |
T |
|
| Q |
406 |
tgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38190219 |
----tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaa |
38190152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 38207758 - 38208203
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38207758 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacga |
38207857 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38207858 |
ggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaa |
38207957 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttactt |
308 |
Q |
| |
|
|||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
38207958 |
gaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttactt |
38208057 |
T |
|
| Q |
309 |
cttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttt |
405 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38208058 |
cttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat---------- |
38208135 |
T |
|
| Q |
406 |
tgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38208136 |
----tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaa |
38208203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 38217822 - 38217377
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38217822 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacga |
38217723 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38217722 |
ggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaa |
38217623 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatt---tcttattcatgctttactt |
308 |
Q |
| |
|
|||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
38217622 |
gaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttactt |
38217523 |
T |
|
| Q |
309 |
cttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttt |
405 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38217522 |
cttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat---------- |
38217445 |
T |
|
| Q |
406 |
tgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38217444 |
----tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaa |
38217377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 38455894 - 38456339
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38455894 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacga |
38455993 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38455994 |
ggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaa |
38456093 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaat---ttcttattcatgctttactt |
308 |
Q |
| |
|
|||||| || | |||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
38456094 |
gaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaagctggctcatgaggtaatttcttcttattcatgctttactt |
38456193 |
T |
|
| Q |
309 |
cttttact---ttctttaatttgaaatattgatctatcacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctttt |
405 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38456194 |
cttttactttcttctttaatttcaaatattcatctatcacttgtgtt------------atattttgttgatcatgtcattaatttgtat---------- |
38456271 |
T |
|
| Q |
406 |
tgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38456272 |
----tcagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaa |
38456339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 38447000 - 38447258
Alignment:
| Q |
12 |
catcatcatcgaccgatactaaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacga |
111 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
38447000 |
catcatcatcggtcgatactaaaaaaggaaaatggtcaaaagaagaggatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattgggacga |
38447099 |
T |
|
| Q |
112 |
ggtatcgaaaaatgcggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaa |
211 |
Q |
| |
|
|||||| || || | || ||| || | ||| | |||||| ||| | |||||||||||| |||| ||| | ||| |||||||||||||||||| || |
|
|
| T |
38447100 |
ggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaa |
38447199 |
T |
|
| Q |
212 |
gaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaa |
270 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||| |||| ||||| ||||||||||||||| |
|
|
| T |
38447200 |
gaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaa |
38447258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 366 - 471
Target Start/End: Original strand, 38447402 - 38447507
Alignment:
| Q |
366 |
tattttgttgatcatgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaa |
465 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
38447402 |
tatttttttgatcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaaga |
38447501 |
T |
|
| Q |
466 |
gaaaac |
471 |
Q |
| |
|
|||||| |
|
|
| T |
38447502 |
gaaaac |
38447507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 32 - 343
Target Start/End: Complemental strand, 53352110 - 53351796
Alignment:
| Q |
32 |
aaaaaaggaacatggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaa-----cgaggtatcgaaaaatgc |
126 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
53352110 |
aaaaaaggaaaatggtcaaaagaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgc |
53352011 |
T |
|
| Q |
127 |
ggggcttttacgttgcggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaa |
226 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| || ||||||||||||||| |||| ||| |
|
|
| T |
53352010 |
ggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaaaccaaa |
53351911 |
T |
|
| Q |
227 |
gtttttgtgttctataaaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctttt-actttctttaat |
325 |
Q |
| |
|
|| ||| ||||| ||| || | |||||||||||||||||||||||||||| | |||| ||| | ||||||||||||||||||| ||| ||| || |
|
|
| T |
53351910 |
gtctttcggttctttaacaactttggtgaattcaaatggtctaagctggctcaagagg---ttttatcttcatgctttacttcttttctttttgttttat |
53351814 |
T |
|
| Q |
326 |
ttgaaatattgatctatc |
343 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
53351813 |
ttgaaatatttatctatc |
53351796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 53351463 - 53351367
Alignment:
| Q |
385 |
ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttgaaaggcgt |
482 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||| |
|
|
| T |
53351463 |
ttaatttgtattctttctttt-gtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt |
53351367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 53351739 - 53351679
Alignment:
| Q |
343 |
cacttgtgttttaccttgttgattattttgttgatcatgtcattaatttgtattcgttctt |
403 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
53351739 |
cacttgtgttataccttgttgattattttggtgatcatgtcattaatttgtatttgttctt |
53351679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 38342328 - 38342596
Alignment:
| Q |
43 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgc |
142 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| || || |||| ||| || || |
|
|
| T |
38342328 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38342427 |
T |
|
| Q |
143 |
ggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctata |
242 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| || | ||| ||| | | ||||||||||||||| ||||||||||| |||| | |||| ||| | | |
|
|
| T |
38342428 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt |
38342527 |
T |
|
| Q |
243 |
aaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt |
311 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| |||||| || || ||||||||||||||||| |
|
|
| T |
38342528 |
ctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttctt |
38342596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 38446521 - 38446789
Alignment:
| Q |
43 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgcggggcttttacgttgc |
142 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| || || |||| ||| || || |
|
|
| T |
38446521 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38446620 |
T |
|
| Q |
143 |
ggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctata |
242 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| || | ||| ||| | | ||||||||||||||| ||||||||||| |||| | |||| ||| | | |
|
|
| T |
38446621 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaagaaaaattctttgagttatttt |
38446720 |
T |
|
| Q |
243 |
aaaagtatggtgaattcaaatggtctaagctggctgaggaggtaatttcttattcatgctttacttctt |
311 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| |||||| || || ||||||||||||||||| |
|
|
| T |
38446721 |
ctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttacttctt |
38446789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 38342704 - 38342790
Alignment:
| Q |
385 |
ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaac |
471 |
Q |
| |
|
||||||||||||| ||||||||||| ||| | || ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38342704 |
ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaac |
38342790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 38446897 - 38446983
Alignment:
| Q |
385 |
ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaac |
471 |
Q |
| |
|
||||||||||||| ||||||||||| ||| | || ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38446897 |
ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaac |
38446983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 4121599 - 4121684
Alignment:
| Q |
385 |
ttaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaa |
470 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||| || |||||| ||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
4121599 |
ttaatttgcattcgttctctttgtgacagtttcctggaagatcagataatgctatcaagaacttttggaatgcaagaaaaagaaaa |
4121684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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