View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4481_low_8 (Length: 460)
Name: NF4481_low_8
Description: NF4481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4481_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 214 - 441
Target Start/End: Original strand, 7969180 - 7969407
Alignment:
| Q |
214 |
tccttaatagaacataaatcttatacagctcaagacaaaacagaaaaaacaataatgtattatttctctacttatagggagattgtcttcatgacaaggg |
313 |
Q |
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| T |
7969180 |
tccttaatagaacataaatcttatacagctcaagacaaaacagaaaaaacagtaatgtattatttctctacttatagggagattgtcttcatgacaaggg |
7969279 |
T |
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| Q |
314 |
ttgccgacagcggcagatgatgaggtggatgattgcctgctcttggatttagtaatcggtgatgatggtgcagtggtcatctagtctccgatgaggcggc |
413 |
Q |
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| T |
7969280 |
ttgccgacagtggcagatgatgaggtggatgattgcctgcttttggatttagtaattggtgatgatggcgcagtggtcatctagtctccgatgaggcggc |
7969379 |
T |
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| Q |
414 |
tgacgaggtggagggttgacctctcttg |
441 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7969380 |
tgacgaggtggagggttgacctctcttg |
7969407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 441
Target Start/End: Complemental strand, 37577873 - 37577697
Alignment:
| Q |
263 |
caataatgtattatttctctacttatagggagattgtcttcatgacaagggttgccgacagcggcagatgatgaggtggatgattgcctgctcttggatt |
362 |
Q |
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| T |
37577873 |
caataatgtatgacttctcaacttatatggtgattgtcttcatgacaagggtcaccaacggcggcagacaatgaggtggacggttgcatgctcttggatg |
37577774 |
T |
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| Q |
363 |
tagtaatcggtgatgatggtgcagtggtcatctagtctccgatgaggcggctgacgaggtggagggttgacctctcttg |
441 |
Q |
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| T |
37577773 |
tattaatcgggg--gattgtgcggaggtcatctaatcccccatgatgcggaggacgaatttgagggttgacttctcttg |
37577697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 32895287 - 32895222
Alignment:
| Q |
330 |
atgatgaggtggatgattgcctgctcttggatttagtaatcggtgatgatggtgcagtggtcatctagtc |
399 |
Q |
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| T |
32895287 |
atgataaggtggatggttgcctgctcttggatgtagtaat-ggtgatga---cgcagtggtcatctagtc |
32895222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 32651175 - 32651301
Alignment:
| Q |
278 |
tctctacttatagggagattgtcttcatgacaagggttgccgacagcggcagatgatgaggtggatgattgcctgctcttggatttagtaatcggtgatg |
377 |
Q |
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| T |
32651175 |
tctctacttatagggtgactgtcttcgtgataacggttgccgatggcagcagatgatgaggtggacggttgacttctcttggatatagtaatcgg---cg |
32651271 |
T |
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| Q |
378 |
atggtgcagtggtcatctagtctccgatga |
407 |
Q |
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| T |
32651272 |
atggtgcagtggtcatctagtccccgatga |
32651301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 370
Target Start/End: Complemental strand, 25470117 - 25470010
Alignment:
| Q |
263 |
caataatgtattatttctctacttatagggagattgtcttcatgacaagggttgccgacagcggcagatgatgaggtggatgattgcctgctcttggatt |
362 |
Q |
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||||||| ||||| || ||||||||||||| |||||||||||||| | ||| ||||| || || ||||||||||| |||| |||||||||||||||| |
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| T |
25470117 |
caataatatattaattttctacttatagggtgattgtcttcatgatacaggtcgccgatggcagcggatgatgaggttgatggttgcctgctcttggatg |
25470018 |
T |
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| Q |
363 |
tagtaatc |
370 |
Q |
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|||||||| |
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| T |
25470017 |
tagtaatc |
25470010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 433
Target Start/End: Complemental strand, 32740694 - 32740594
Alignment:
| Q |
330 |
atgatgaggtggatgattgcctgctcttggatttagtaatcggtgatgatggtgcagtggtcatctagtctccgatgaggcggctgacgaggtggagggt |
429 |
Q |
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||||| ||||||| |||||| ||||||||| ||||||||||||||| || || |||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
32740694 |
atgataaggtggacaattgccaactcttggatgtagtaatcggtgatggtgttg---tggtcatctagtctccaaggaggcggaggacgaggtggagggt |
32740598 |
T |
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| Q |
430 |
tgac |
433 |
Q |
| |
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|||| |
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| T |
32740597 |
tgac |
32740594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 32768662 - 32768567
Alignment:
| Q |
263 |
caataatgtattatttctctacttatagggagattgtcttcatgacaagggttgccgacagcggcagatgatgaggtggatgattgcctgctcttg |
358 |
Q |
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| T |
32768662 |
caataatgtattactttactacttatagggtgtttgtcttcatgataagggtccccgacggcggcaaacgatgaggtggacggctgcctgctcttg |
32768567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 28475529 - 28475450
Alignment:
| Q |
264 |
aataatgtattatttctctacttatagggag-attgtcttcatgacaagggttgccgacagcggcagatgatgaggtgga |
342 |
Q |
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| T |
28475529 |
aataatgcatgacttctctacatatagggtggattgtcttcacgataagggttgccgacagcggtggacgatgaggtgga |
28475450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 2166106 - 2166159
Alignment:
| Q |
263 |
caataatgtat--tatttctctacttatagggagattgtcttcatgacaagggt |
314 |
Q |
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||||||||||| ||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
2166106 |
caataatgtatgatatctctctagttataaggagattgtcttcatgacaagggt |
2166159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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