View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4482-Insertion-1 (Length: 1156)

Name: NF4482-Insertion-1
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4482-Insertion-1
NF4482-Insertion-1
[»] chr3 (5 HSPs)
chr3 (7-1111)||(2180163-2181264)
chr3 (934-1033)||(16457058-16457157)
chr3 (492-694)||(20132289-20132490)
chr3 (801-889)||(9633018-9633105)
chr3 (653-691)||(4567448-4567486)
[»] chr1 (1 HSPs)
chr1 (954-1089)||(897714-897853)
[»] chr7 (6 HSPs)
chr7 (932-1015)||(20277042-20277125)
chr7 (926-1013)||(2931731-2931818)
chr7 (926-1044)||(3374683-3374802)
chr7 (640-680)||(23690361-23690401)
chr7 (897-977)||(26701364-26701443)
chr7 (801-888)||(26701555-26701642)
[»] chr8 (5 HSPs)
chr8 (896-1009)||(29345769-29345881)
chr8 (897-1013)||(6403928-6404043)
chr8 (899-1091)||(5650590-5650788)
chr8 (954-1033)||(31347952-31348031)
chr8 (993-1092)||(12105616-12105717)
[»] chr4 (5 HSPs)
chr4 (899-1033)||(39073918-39074053)
chr4 (819-889)||(39073790-39073860)
chr4 (958-1007)||(27739486-27739535)
chr4 (533-642)||(15182087-15182195)
chr4 (547-592)||(15788655-15788700)
[»] chr6 (5 HSPs)
chr6 (610-691)||(35168568-35168649)
chr6 (899-1000)||(28736250-28736350)
chr6 (896-976)||(4485308-4485386)
chr6 (638-708)||(2878134-2878201)
chr6 (896-1000)||(8495528-8495633)
[»] chr2 (6 HSPs)
chr2 (801-889)||(22967206-22967293)
chr2 (953-1000)||(832450-832497)
chr2 (898-995)||(41573733-41573827)
chr2 (635-680)||(18426849-18426894)
chr2 (801-889)||(41573941-41574028)
chr2 (897-963)||(15539289-15539355)
[»] chr5 (2 HSPs)
chr5 (532-606)||(35668711-35668785)
chr5 (896-945)||(7411743-7411791)


Alignment Details
Target: chr3 (Bit Score: 915; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 915; E-Value: 0
Query Start/End: Original strand, 7 - 1111
Target Start/End: Complemental strand, 2181264 - 2180163
Alignment:
Q  7 agggagctgaatgaagaattaggcgacaacgcaagcttaggggaatatttggcaagggcaatgagaaagtttgaagaaaggccataatttgaagttggag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181264 agggagctgaatgaagaattaggcgacaacgcaagcttaggggaatatttggcaagggcaatgagaaagtttgaagaaaggccataatttgaagttggag 2181165  T
Q  107 ctgataaggtaatgcttagaactgccaacattttctaccatcatactgagtccaagaagaaatggtatggctcattcacagtgcaatgcatctgcaaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2181164 ctgataaggtaatgcttagaactgccaacattttctaccatcatactcagtccaagaagaaatggtatggctcattcactgtgcaatgcatctgcaaaag 2181065  T
Q  207 tggacatgttgtaatctgggacgatataatttggttcactaagataaggaagtcagagctgaagctagttgaagagcatgaagaagatgagttggcagca 306  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181064 tagacatgttgtaatctgggacgatataatttggttcactaagataaggaagtcagagctgaagctagttgaagagcatgaagaagatgagttggcagca 2180965  T
Q  307 ggcgaggagcatgttgagtagaggctcaagatcacaacgtagactcattcgtcaaactattgacgttagacgagcgttgaatgagagataattcactggt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||    
T  2180964 ggcgaggagcatgttgagtagaggctcaagatcacaacgtagactcattcgtcaaactattgacgttagacgagcgttgaatgagggaaaattcattggt 2180865  T
Q  407 tttaattttctggtgaaattttaattcttgtcatgttttagatattcatatgatcacttactgtttcnnnnnnnnnnnnnnntgttttttgtctcataga 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||    
T  2180864 tttaattttctggtgaaattttaattcttgtcatgttttagatattcatatgatcacttactgtttcaaaatattttaaaaatgttttttgtctcataga 2180765  T
Q  507 attgttcttaccatcgatgcggaaggctagcttacccccaaagttcaagaacatgataactattggggcttattgcaaaagatactcataataatcacca 606  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2180764 attgttcttaccttcaatgcggaaggctagcttacccccaaagttcaagaacatgataactattgaggcttattgcaaaagatactcataataatcacca 2180665  T
Q  607 tattcttttctttgtagcataatccattagaatttgaaccaaatatttttcactttttactataattctttcatcatgtgtgaatatccatatttaaatg 706  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2180664 tattcttttctctgtagcataatccattagaatttgaaccaaatatttttcactttttactataattctttcatcatgtgtgaatatccatatttaaatg 2180565  T
Q  707 ttgttccggaccgacataaactcaatgcgaataagtccaacaagagggccccaataaagtcaagacccacattcctctcaagaagcaccagaacgatgaa 806  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2180564 ttgttccggaccggcataaactcaatgcgaataagtccaacaagagggccccaataaagtcaagacccacattcctctcaagaagcaccagaacgatgaa 2180465  T
Q  807 agtttaggaggctgaacgatggcatgcttgaagatattgctattgcgaaaattagtggggctatatatgtgcactacttagtgtataattgaaaacttgt 906  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2180464 agtttaggaggctgaacgatggcatgcttgaagatattgctattgcaaaaattagcggggctatatatgtgcactacttagtgtataattgaaaacttgt 2180365  T
Q  907 aatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaa 1006  Q
    |||||||||||||||||| |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2180364 aatcattttagtatataa-ttgaaattgtgtt-----gtactttttcattatgaaataaaatttcaaatgtttgtatgagaacatatttggagttgcaaa 2180271  T
Q  1007 tctgaatg-agtttaatcttctaatattaggtaattc-aatatgaatgaaatctaggcaacattaaattgggtaaattcacaa-tttttagtctaggcaa 1103  Q
    |||||||| ||||||||||||||||||| | |||||| |||||||| ||| |||| ||||   |||||| ||||||||||||| |||||| |||||||||    
T  2180270 tctgaatgaagtttaatcttctaatattggttaattcaaatatgaacgaactctaagcaaacataaatttggtaaattcacaattttttaatctaggcaa 2180171  T
Q  1104 ttttctga 1111  Q
    ||||||||    
T  2180170 ttttctga 2180163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 934 - 1033
Target Start/End: Original strand, 16457058 - 16457157
Alignment:
Q  934 gtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaatctgaatgagtttaatcttctaatatt 1033  Q
    |||||||||| | | ||| ||||||||||| |||||||||||||||||||| | | ||||||||||||| |||||| ||||| ||| |||||| ||||||    
T  16457058 gtgttgcatacttcatttccattatgaaatcaaatttcaaatgtttgtatggggaaatatttggagttgtaaatctaaatgaattttatcttcaaatatt 16457157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 492 - 694
Target Start/End: Original strand, 20132289 - 20132490
Alignment:
Q  492 tttttgtctcatagaattgttcttaccatcgatgcggaaggctagcttacccccaaagttcaagaacatgataactattggggcttattgcaaaagatac 591  Q
    ||||||| ||| |||||||||||||||||| | |  ||  | ||||||||||| | ||||||||| |  ||||| |||| ||||||| || | |||||||    
T  20132289 tttttgtttcaaagaattgttcttaccatcaaggaagacagatagcttacccctatagttcaagagctcgataaatattagggcttactgtataagatac 20132388  T
Q  592 tcataataatcaccatattcttttctttgtagcataatccattagaatttgaaccaaatatttttcactttttactataattctttcatcatgtgtgaat 691  Q
    |||| || ||||||||  |||||||| | |||||||||   | |||| |||| |||||||| || ||||||||| ||||||   |||||||| ||||| |    
T  20132389 tcatcatgatcaccat-ctcttttctctatagcataattggtgagaacttgagccaaatatattccactttttattataatatgttcatcatatgtgagt 20132487  T
Q  692 atc 694  Q
    |||    
T  20132488 atc 20132490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 801 - 889
Target Start/End: Original strand, 9633018 - 9633105
Alignment:
Q  801 gatgaaagtttaggaggctgaacgatggcatgcttgaagatattgctattgcgaaaattagtggggctatatatgtgcactacttagtg 889  Q
    |||||||| |||||||||| || |||||||||||| | ||| || ||||||| |||||||||| ||||||| |||||||||| ||||||    
T  9633018 gatgaaagcttaggaggctaaatgatggcatgcttaaggat-tttctattgcaaaaattagtgcggctatagatgtgcactatttagtg 9633105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 653 - 691
Target Start/End: Complemental strand, 4567486 - 4567448
Alignment:
Q  653 ttttcactttttactataattctttcatcatgtgtgaat 691  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  4567486 ttttcactttttactataattctttcatcatatgtgaat 4567448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 954 - 1089
Target Start/End: Complemental strand, 897853 - 897714
Alignment:
Q  954 attatgaaataaaatttcaaatgtttgtatgaga--atatatttggagttgcaaatctgaat-gagtttaatcttctaatattaggtaa-ttcaatatga 1049  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| |||||||||| ||| |||||||||||||||||| ||| ||| || |||||||    
T  897853 attatgaaatcaaatttcaaatgtttgtatgagaacatatatttggaattgcaaatctaaatggagtttaatcttctaatactagttaatttaaatatga 897754  T
Q  1050 atgaaatctaggcaacattaaattgggtaaattcacaatt 1089  Q
    ||||| |||| |||| |  ||||| |||||||||||||||    
T  897753 atgaagtctaagcaaaaacaaatttggtaaattcacaatt 897714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 932 - 1015
Target Start/End: Original strand, 20277042 - 20277125
Alignment:
Q  932 ttgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaatctgaatga 1015  Q
    |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  20277042 ttgtgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatatttggagttgcaaatctaaatga 20277125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 926 - 1013
Target Start/End: Original strand, 2931731 - 2931818
Alignment:
Q  926 ttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaatctgaat 1013  Q
    |||||||||||||||||| | | ||| ||||||||||| |||||  ||||||||||||||||| |||||| |||||| ||||||||||    
T  2931731 ttgaaattgtgttgcatacttcatttccattatgaaatcaaattataaatgtttgtatgagaaaatatttagagttgtaaatctgaat 2931818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 926 - 1044
Target Start/End: Complemental strand, 3374802 - 3374683
Alignment:
Q  926 ttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaatctgaatg-agtttaatct 1024  Q
    |||||| ||||||| ||||  | ||| ||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| | |||||| ||||| ||||    
T  3374802 ttgaaaatgtgttgtataggtcatttccattatgaaatcaaatttcaaatgtttttatgagaacatatttggtgttgcaagtttgaatgaagtttgatct 3374703  T
Q  1025 tctaatattaggtaattcaa 1044  Q
      ||||||| | ||||||||    
T  3374702 aataatattggttaattcaa 3374683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 640 - 680
Target Start/End: Complemental strand, 23690401 - 23690361
Alignment:
Q  640 ttgaaccaaatatttttcactttttactataattctttcat 680  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  23690401 ttgagccaaacatttttcactttttactataattctttcat 23690361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 897 - 977
Target Start/End: Complemental strand, 26701443 - 26701364
Alignment:
Q  897 gaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgt 977  Q
    ||||| |||||||  ||||||||| |||||| |||||||||||||  || | ||| ||||||||||| |||||||||||||    
T  26701443 gaaaagttgtaattgttttagtatgtaattt-aaattgtgttgcacggttcatttccattatgaaattaaatttcaaatgt 26701364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 801 - 888
Target Start/End: Complemental strand, 26701642 - 26701555
Alignment:
Q  801 gatgaaagtttaggaggctgaacgatggcatgcttgaagatattgctattgc-gaaaattagtggggctatatatgtgcactacttagt 888  Q
    |||||||| | ||| |||| | || |||||||||||| |||||||| ||||| ||||| ||||||||||||  ||||||||||||||||    
T  26701642 gatgaaagctaagggggctaatcgttggcatgcttgaggatattgc-attgcagaaaactagtggggctatgaatgtgcactacttagt 26701555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 8e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 896 - 1009
Target Start/End: Complemental strand, 29345881 - 29345769
Alignment:
Q  896 tgaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatattt 995  Q
    ||||||||| ||||||||||| ||| |||||  |  |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  29345881 tgaaaacttttaatcattttaatatgtaattc-actttgtgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatattt 29345783  T
Q  996 ggagttgcaaatct 1009  Q
     |||||||||||||    
T  29345782 agagttgcaaatct 29345769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 897 - 1013
Target Start/End: Complemental strand, 6404043 - 6403928
Alignment:
Q  897 gaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttg 996  Q
    |||||||| ||||  || |||||| ||||| |||||||||||||||| | | ||| ||||||||||| |||||||||||||||||||| | | |||||||    
T  6404043 gaaaacttctaatagttatagtatgtaatt-gaaattgtgttgcatacttcatttccattatgaaatcaaatttcaaatgtttgtatggggaaatatttg 6403945  T
Q  997 gagttgcaaatctgaat 1013  Q
    |||||| |||| |||||    
T  6403944 gagttgtaaatttgaat 6403928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 899 - 1091
Target Start/End: Original strand, 5650590 - 5650788
Alignment:
Q  899 aaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttg-- 996  Q
    |||| |||||| |||||||||| ||||| ||| |||||||||||||| | ||||  || |||||| |||||||||| |||| |||||||| ||||||       
T  5650590 aaacatgtaataattttagtatgtaatt-gaagttgtgttgcatagttcgttttatttttgaaatcaaatttcaaacgtttatatgagaacatatttact 5650688  T
Q  997 ---gagttgcaaatctgaatga-gtttaatcttctaatattaggtaattcaa-tatgaatgaaatctaggcaacattaaattgggtaaattcacaatttt 1091  Q
       ||||||||||  ||||||| |||  ||||||| ||||| | |||||||| ||||||||||||||| ||||    |||| ||||||||| ||||||||    
T  5650689 tttgagttgcaaaattgaatgacgttcgatcttctcatattggttaattcaaatatgaatgaaatctaagcaatgacaaatcgggtaaattaacaatttt 5650788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 954 - 1033
Target Start/End: Complemental strand, 31348031 - 31347952
Alignment:
Q  954 attatgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaatctgaatgagtttaatcttctaatatt 1033  Q
    |||||||||| ||||||||||||||||| || | | ||||||||||||| ||||||||||||  || |||||| ||||||    
T  31348031 attatgaaatcaaatttcaaatgtttgtttgggtaaatatttggagttgtaaatctgaatgaaatttatcttcaaatatt 31347952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 993 - 1092
Target Start/End: Complemental strand, 12105717 - 12105616
Alignment:
Q  993 tttggagttgcaaatctgaatgagttta-atcttctaatattaggtaattcaa-tatgaatgaaatctaggcaacattaaattgggtaaattcacaattt 1090  Q
    |||| ||||| |||| ||||||| |||  ||||||| ||||| | |||||||| ||||||||||||||| |||| |  ||||| |||| |||||||||||    
T  12105717 tttgaagttgtaaatttgaatgactttcgatcttctcatattggttaattcaaatatgaatgaaatctaagcaaaaacaaatttggtagattcacaattt 12105618  T
Q  1091 tt 1092  Q
    ||    
T  12105617 tt 12105616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 899 - 1033
Target Start/End: Original strand, 39073918 - 39074053
Alignment:
Q  899 aaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttgga 998  Q
    |||||||||||| || || ||| ||||| |||||||||||||||||| | ||| || |||||||| ||||||||||| ||||||||| || |||||||||    
T  39073918 aaacttgtaatcgttctaatatgtaatt-gaaattgtgttgcatagttcatttccaatatgaaatcaaatttcaaatatttgtatgataacatatttgga 39074016  T
Q  999 gttgcaaatctgaatga--gtttaatcttctaatatt 1033  Q
    ||||| |||| ||||||   |||| ||||||||||||    
T  39074017 gttgccaatccgaatgaatttttagtcttctaatatt 39074053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 819 - 889
Target Start/End: Original strand, 39073790 - 39073860
Alignment:
Q  819 tgaacgatggcatgcttgaagatattgctattgcgaaaattagtggggctatatatgtgcactacttagtg 889  Q
    ||||||||| |||| |||| ||||||| |||||| |||| |||||||| |||| |||||||||||||||||    
T  39073790 tgaacgatgacatgtttgaggatattgttattgcaaaaactagtggggttatagatgtgcactacttagtg 39073860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 958 - 1007
Target Start/End: Original strand, 27739486 - 27739535
Alignment:
Q  958 tgaaataaaatttcaaatgtttgtatgagaatatatttggagttgcaaat 1007  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  27739486 tgaaatcaactttcaaatgtttgtatgagaacatatttggagttgcaaat 27739535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 642
Target Start/End: Original strand, 15182087 - 15182195
Alignment:
Q  533 ctagcttacccccaaagttcaagaacatgataactattggggcttattgcaaaagatactcataataatcaccatattcttttctttgtagcataatcca 632  Q
    ||||||||||||| |||||||| | |||||||||||||| | |||  | ||||| ||| |||| | |||||||||  |||||||| | |||||||| | |    
T  15182087 ctagcttacccccgaagttcaatagcatgataactattgtgacttgctacaaaatatattcatcacaatcaccat-ctcttttctgtatagcataaccga 15182185  T
Q  633 ttagaatttg 642  Q
    | ||||||||    
T  15182186 tgagaatttg 15182195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 547 - 592
Target Start/End: Complemental strand, 15788700 - 15788655
Alignment:
Q  547 aagttcaagaacatgataactattggggcttattgcaaaagatact 592  Q
    ||||||||||||| ||||||||||| ||||| ||||| ||||||||    
T  15788700 aagttcaagaacacgataactattgaggcttgttgcagaagatact 15788655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 610 - 691
Target Start/End: Complemental strand, 35168649 - 35168568
Alignment:
Q  610 tcttttctttgtagcataatccattagaatttgaaccaaatatttttcactttttactataattctttcatcatgtgtgaat 691  Q
    |||||||| | ||||||||||  | ||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||    
T  35168649 tcttttctctatagcataatcagtgagaatttgagccaattattttccactttttactataattctttcattatgtgtgaat 35168568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 899 - 1000
Target Start/End: Original strand, 28736250 - 28736350
Alignment:
Q  899 aaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatatttgga 998  Q
    |||||||||||  ||||||||| ||||| |||||| ||||||||| ||  ||| |||||||||||  |||||||| |||||| ||||||| |||||| ||    
T  28736250 aaacttgtaatggttttagtatctaatt-gaaattttgttgcatactaaatttccattatgaaatctaatttcaagtgtttgaatgagaacatatttaga 28736348  T
Q  999 gt 1000  Q
    ||    
T  28736349 gt 28736350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 896 - 976
Target Start/End: Original strand, 4485308 - 4485386
Alignment:
Q  896 tgaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatg 976  Q
    |||||||||||||||| |||||||| ||| ||||||| |||||||||||| | || | |||||||||| ||||||||||||    
T  4485308 tgaaaacttgtaatcagtttagtatgtaa-ttgaaatcgtgttgcatagtgcattct-attatgaaatcaaatttcaaatg 4485386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 638 - 708
Target Start/End: Original strand, 2878134 - 2878201
Alignment:
Q  638 atttgaaccaaatatttttcactttttactataattctttcatcatgtgtgaatatccatatttaaatgtt 708  Q
    |||||| ||||| |||||||||||||| |||||||||||   |||| ||||| ||||||| ||||||||||    
T  2878134 atttgagccaaacatttttcacttttttctataattctt---tcatatgtgagtatccatgtttaaatgtt 2878201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 896 - 1000
Target Start/End: Original strand, 8495528 - 8495633
Alignment:
Q  896 tgaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactt--tttcattatgaaataaaatttcaaatgtttgtatgagaatatat 993  Q
    |||||| |||||||  ||||||||| ||||  |||||||||||||||||| | |  ||||||||||||||   |||||||||||||||  ||||| | ||    
T  8495528 tgaaaatttgtaatagttttagtatgtaatg-gaaattgtgttgcatagttcatattttcattatgaaatccgatttcaaatgtttgttagagaacacat 8495626  T
Q  994 ttggagt 1000  Q
    |||||||    
T  8495627 ttggagt 8495633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 801 - 889
Target Start/End: Complemental strand, 22967293 - 22967206
Alignment:
Q  801 gatgaaagtttaggaggctgaacgatggcatgcttgaagatattgctattgcgaaaattagtggggctatatatgtgcactacttagtg 889  Q
    |||||||| |||||||||| || |||||||||||| | ||| || ||||||| |||||||||| ||||||| |||||||||||||||||    
T  22967293 gatgaaagcttaggaggctaaatgatggcatgcttaaggatttt-ctattgcaaaaattagtgcggctatagatgtgcactacttagtg 22967206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 953 - 1000
Target Start/End: Complemental strand, 832497 - 832450
Alignment:
Q  953 cattatgaaataaaatttcaaatgtttgtatgagaatatatttggagt 1000  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||    
T  832497 cattatgaaatccaatttcaaatgtttgtatgagaatatatttggagt 832450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 898 - 995
Target Start/End: Complemental strand, 41573827 - 41573733
Alignment:
Q  898 aaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtactttttcattatgaaataaaatttcaaatgtttgtatgagaatatattt 995  Q
    ||||||||||||||||||||||| ||||   ||||||||||| |||||   ||| ||||||||||| ||||||||||||||  |||||||| ||||||    
T  41573827 aaaacttgtaatcattttagtatgtaatca-aaattgtgttgtatagtttatttccattatgaaatcaaatttcaaatgtt--tatgagaacatattt 41573733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 635 - 680
Target Start/End: Complemental strand, 18426894 - 18426849
Alignment:
Q  635 agaatttgaaccaaatatttttcactttttactataattctttcat 680  Q
    ||||||||| |||||||||||| ||||| |||||||||||||||||    
T  18426894 agaatttgagccaaatattttttactttctactataattctttcat 18426849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 801 - 889
Target Start/End: Complemental strand, 41574028 - 41573941
Alignment:
Q  801 gatgaaagtttaggaggctgaacgatggcatgcttgaagatattgctattgcgaaaattagtggggctatatatgtgcactacttagtg 889  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||  | ||||| |||| ||||||||||||   ||||||||| ||||||    
T  41574028 gatgaaagcttaggaggttgatcgatggcatgcttgaggatataac-attgcaaaaactagtggggctatgggtgtgcactatttagtg 41573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 897 - 963
Target Start/End: Original strand, 15539289 - 15539355
Alignment:
Q  897 gaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagtac-tttttcattatgaaat 963  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||| | | |||| |||||||||||    
T  15539289 gaaaatttgtaatcattttagtatataa-ttgaaattgtgtcgcataattcattttccattatgaaat 15539355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 606
Target Start/End: Original strand, 35668711 - 35668785
Alignment:
Q  532 gctagcttacccccaaagttcaagaacatgataactattggggcttattgcaaaagatactcataataatcacca 606  Q
    |||||||||||| | |||||||| |||||| |||||||| ||||||  | |  ||||||||||| ||||||||||    
T  35668711 gctagcttacccgcgaagttcaaaaacatggtaactattagggcttgctacggaagatactcatcataatcacca 35668785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 896 - 945
Target Start/End: Complemental strand, 7411791 - 7411743
Alignment:
Q  896 tgaaaacttgtaatcattttagtatataatttgaaattgtgttgcatagt 945  Q
    |||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  7411791 tgaaaacttgtaatcatttttgtatgtaa-ttcaaattgtgttgcatagt 7411743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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