View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4482-Insertion-2 (Length: 808)

Name: NF4482-Insertion-2
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4482-Insertion-2
NF4482-Insertion-2
[»] chr6 (19 HSPs)
chr6 (570-751)||(19697476-19697661)
chr6 (502-570)||(19697377-19697445)
chr6 (153-281)||(34278071-34278203)
chr6 (112-226)||(32960293-32960408)
chr6 (174-281)||(29300419-29300529)
chr6 (112-271)||(26087162-26087325)
chr6 (133-222)||(34257873-34257966)
chr6 (489-564)||(29012940-29013015)
chr6 (497-564)||(29131416-29131483)
chr6 (112-207)||(25549407-25549506)
chr6 (758-807)||(19698377-19698426)
chr6 (190-281)||(25490554-25490647)
chr6 (174-281)||(29151769-29151883)
chr6 (497-564)||(32740617-32740684)
chr6 (114-164)||(33869730-33869780)
chr6 (125-226)||(34274359-34274465)
chr6 (229-282)||(33869602-33869655)
chr6 (241-281)||(25526589-25526629)
chr6 (192-281)||(34282244-34282336)
[»] chr4 (6 HSPs)
chr4 (168-279)||(54294677-54294791)
chr4 (497-564)||(9569300-9569367)
chr4 (497-564)||(9581885-9581952)
chr4 (497-564)||(9587580-9587647)
chr4 (501-564)||(9593682-9593745)
chr4 (367-425)||(54294847-54294904)
[»] chr7 (1 HSPs)
chr7 (489-564)||(42446445-42446520)
[»] chr8 (1 HSPs)
chr8 (193-254)||(5709559-5709623)
[»] chr3 (1 HSPs)
chr3 (193-254)||(2885796-2885860)
[»] chr2 (1 HSPs)
chr2 (193-254)||(16186188-16186252)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 570 - 751
Target Start/End: Original strand, 19697476 - 19697661
Alignment:
Q  570 atgaagagtttaattagtctatgattccatcgtatcgagctccccatatattgatatgtgaaaagtagtcgtctcatcatgaaatgagatcaataatact 669  Q
    ||||||||||||||||| |||  ||||||| |||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19697476 atgaagagtttaattaggctacaattccatggtactgagttccctatatattgatatgtgaaaagtagtcgtctcatcatgaaatgagatcaataatacg 19697575  T
Q  670 gacctagtaaacaccaccaattttataactcgtgttccaacagtgaaacaatcatctacgttt----gtatgggtgttgtaaaaat 751  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  19697576 gacctaataaacaccactaattttataactcgtgttccaacagtgaaacaatcatctacgtttcatggtatgggtgttgtaaaaat 19697661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 502 - 570
Target Start/End: Original strand, 19697377 - 19697445
Alignment:
Q  502 taaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccacaccata 570  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19697377 taaatcaagacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccacaccata 19697445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 153 - 281
Target Start/End: Original strand, 34278071 - 34278203
Alignment:
Q  153 taaaggcaaaagctcattcatttg---atatagaaaccaaataagtttgcaaataaaatgagagtaaacatt-aaaaaagatgcaaaagcaggatcaagt 248  Q
    |||||||||| | ||||||||||    |||||||| |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||     
T  34278071 taaaggcaaatgatcattcatttattaatatagaagccaaataagtttgcaaataaaacgagagtaaacattaaaaaaaaatgcaaaagcaagatcaagc 34278170  T
Q  249 agtttcttagtttacttaacaataattgtgata 281  Q
    ||| || |||||||||| ||||||| |||||||    
T  34278171 agtgtcatagtttacttgacaataactgtgata 34278203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 32960293 - 32960408
Alignment:
Q  112 catatataagtgatttctaca--taaaactagagatcattagataaaggcaaaagctcattcatttgatatagaaaccaaataagtttgcaaataaaatg 209  Q
    ||||||||||| |||||||||  |||||||| |||||||||| ||| |||||||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  32960293 catatataagttatttctacacataaaactaaagatcattagctaa-ggcaaaagttcattcatttgatttaaaaaccaactaagtttgcaaataaaatg 32960391  T
Q  210 agagtaaacattaaaaa 226  Q
    ||||| |||||| ||||    
T  32960392 agagtgaacatttaaaa 32960408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 29300529 - 29300419
Alignment:
Q  174 ttgatatagaaaccaaataagtttgcaaataaaatgagagtaaacattaaaaa---agatgcaaaagcaggatcaagtagtttcttagtttacttaacaa 270  Q
    ||||||||||| ||| ||||||||| ||||||||  |||||||||||| ||||   | ||||||||||| | |||||||||||| |||||||||| ||||    
T  29300529 ttgatatagaagccagataagtttgaaaataaaacaagagtaaacattcaaaataaaaatgcaaaagcaagttcaagtagtttcctagtttacttgacaa 29300430  T
Q  271 taattgtgata 281  Q
    |||||||||||    
T  29300429 taattgtgata 29300419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 26087162 - 26087325
Alignment:
Q  112 catatataagtgatttctacataaaactagagatcattagataaaggcaaaagctcattcat----ttgatatagaaaccaaataagtttgcaaataaaa 207  Q
    ||||||||| | |||||||| |||| |||||| ||||| | |||||||||||| ||||||||    ||||||||||||||| ||| |||||| |||||||    
T  26087162 catatataaattatttctacttaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagatatgtttgcgaataaaa 26087261  T
Q  208 tgagagtaaacattaaa--aaagatgcaaaagcaggatcaagtagtttcttagtttacttaacaat 271  Q
       ||||||   | |||  ||| ||||||||||| ||||||||||||||||||| ||||| |||||    
T  26087262 --cgagtaagattcaaactaaaaatgcaaaagcaagatcaagtagtttcttagtatacttgacaat 26087325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 34257873 - 34257966
Alignment:
Q  133 taaaactagagatcattagataaaggcaaaagctcattcat----ttgatatagaaaccaaataagtttgcaaataaaatgagagtaaacatta 222  Q
    ||||||||||||||||| | |||||||||||| ||| || |    ||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  34257873 taaaactagagatcattcggtaaaggcaaaagatcaatctttttattgatatagaaaccacacaagtttgcaaataagatgagagtaaacatta 34257966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 29013015 - 29012940
Alignment:
Q  489 tcatctgggtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||| |||||||| |||||| | ||||||||||||||||  ||||| |||||||||||||||||||| ||||||||    
T  29013015 tcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttctcctttcgtccccac 29012940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 29131483 - 29131416
Alignment:
Q  497 gtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||||||||||| | ||||||||||||||||  ||||| | |||||||||||||||||||||||||||    
T  29131483 gtacttaaatcaagccaaactagttcttcatcttttcttaggaagaatatttctccttttgtccccac 29131416  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 25549407 - 25549506
Alignment:
Q  112 catatataagtgatttctacataaaactagagatcattagataaaggcaaaagctcattcat----ttgatatagaaaccaaataagtttgcaaataaaa 207  Q
    ||||||||| | |||||||| |||| |||||| ||||| | |||||||||||| ||||||||    ||||||||||||||| |||||||||| |||||||    
T  25549407 catatataaattatttctacgtaaagctagaggtcattcggtaaaggcaaaaggtcattcattttattgatatagaaaccagataagtttgcgaataaaa 25549506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 758 - 807
Target Start/End: Original strand, 19698377 - 19698426
Alignment:
Q  758 tcaagtaaaatcttaccaaacgtggtccaacatcgttattgtattcttca 807  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  19698377 tcaagtaaaatcttaccaaacatggtccaacatcattattgtattcttca 19698426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 25490647 - 25490554
Alignment:
Q  190 ataagtttgcaaataaaatgagagtaaacattaaaa---aagatgcaaaagcaggatcaagtagtttcttagtttacttaacaataattgtgata 281  Q
    |||||||||||||||||| |||||||| |||| |||   || ||||||||||| |||||||||| |||||||| || || |||||||||||||||    
T  25490647 ataagtttgcaaataaaacgagagtaa-cattcaaattaaaaatgcaaaagcaagatcaagtagattcttagtataattgacaataattgtgata 25490554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 29151769 - 29151883
Alignment:
Q  174 ttgatatagaaaccaaataagtttgcaaataaaatgagagtaaacattaa-------aaaagatgcaaaagcaggatcaagtagtttcttagtttactta 266  Q
    ||||||||||| ||| |||||| |||||||||||  |||| |||||||||       || | ||||||||||| ||||||  ||| |||||||||||||     
T  29151769 ttgatatagaagccagataagtatgcaaataaaactagaggaaacattaattaaaaaaataaatgcaaaagcaagatcaaccagtgtcttagtttacttg 29151868  T
Q  267 acaataattgtgata 281  Q
    |||||||||||||||    
T  29151869 acaataattgtgata 29151883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 32740617 - 32740684
Alignment:
Q  497 gtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||| ||||||| | ||||||||||||||||  ||||| | |||||||||||||||||| ||||||||    
T  32740617 gtacataaatcaagccaaactagttcttcatcttttcttaggaagaatatttctcctttcgtccccac 32740684  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 33869780 - 33869730
Alignment:
Q  114 tatataagtgatttctacataaaactagagatcattagataaaggcaaaag 164  Q
    ||||||||| |||||||||||||||||||| ||||| | ||||||||||||    
T  33869780 tatataagttatttctacataaaactagaggtcatttggtaaaggcaaaag 33869730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 34274359 - 34274465
Alignment:
Q  125 tttctacataaaactagagatcattagataaaggcaaaagctcattcattt-----gatatagaaaccaaataagtttgcaaataaaatgagagtaaaca 219  Q
    |||| |||||||||||||| ||||| | |||||| ||||| ||| || |||     ||||||||||||| | ||||||||||||||||||  ||||||||    
T  34274359 tttccacataaaactagaggtcattcggtaaaggtaaaagatcaatcttttttactgatatagaaaccacacaagtttgcaaataaaatgtaagtaaaca 34274458  T
Q  220 ttaaaaa 226  Q
    || ||||    
T  34274459 ttcaaaa 34274465  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 33869655 - 33869602
Alignment:
Q  229 atgcaaaagcaggatcaagtagtttcttagtttacttaacaataattgtgataa 282  Q
    ||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||||    
T  33869655 atgcaaaagcaagataaagtagttttttagtttacttgacaacaattgtgataa 33869602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 25526589 - 25526629
Alignment:
Q  241 gatcaagtagtttcttagtttacttaacaataattgtgata 281  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  25526589 gatcaagtagtttcttagtatacttgacaataattgtgata 25526629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 34282336 - 34282244
Alignment:
Q  192 aagtttgcaaataaaatgagagtaaacat--taaaaaagatgcaaaagcaggatc-aagtagtttcttagtttacttaacaataattgtgata 281  Q
    |||||||||||||||| ||||||||||||  ||  ||| ||||||||||| |||| |||||||  ||||||||| || ||| |||| ||||||    
T  34282336 aagtttgcaaataaaacgagagtaaacatgataccaaaaatgcaaaagcaagatcaaagtagtgccttagtttaattgacactaatcgtgata 34282244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 168 - 279
Target Start/End: Original strand, 54294677 - 54294791
Alignment:
Q  168 attcatttgatatagaaaccaaataagtttgcaaataaaatgagagtaaacatt---aaaaaagatgcaaaagcaggatcaagtagtttcttagtttact 264  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| ||||   || ||| |||| |||| | |||||||||||||||||||| | |    
T  54294677 attcttttgatatagaaaccacataagtttgcaaataaaatgagagtaaccattcaaaataaaaatgctaaagtaagatcaagtagtttcttagttcaat 54294776  T
Q  265 taacaataattgtga 279  Q
    ||| | |||||||||    
T  54294777 taaaattaattgtga 54294791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 9569367 - 9569300
Alignment:
Q  497 gtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    ||||||||||||  ||||||||| |||| ||  ||||| |||| ||||||||||||||||||||||||    
T  9569367 gtacttaaatcaatacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccac 9569300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 9581885 - 9581952
Alignment:
Q  497 gtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||||||||||| ||||||||||||||| ||  | ||| |||| ||||||||||||||| || |||||    
T  9581885 gtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccac 9581952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 564
Target Start/End: Original strand, 9587580 - 9587647
Alignment:
Q  497 gtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||||||||||| ||||||||||||||| ||  | ||| |||| ||||||||||||||| || |||||    
T  9587580 gtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccac 9587647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 564
Target Start/End: Original strand, 9593682 - 9593745
Alignment:
Q  501 ttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||||||| ||||||||||||||| ||  | ||| |||||||||||||||||||| || |||||    
T  9593682 ttaaatcaagacaaactagttctttatcttctctgatgaagaatatttctcctttcgtacccac 9593745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 54294847 - 54294904
Alignment:
Q  367 tcatatagttctttgtgaaaacaagaaaaacagtttaactacttattcctccaatagga 425  Q
    ||||||| ||||||||| ||||||||| |||| || ||| |||||||||||||||||||    
T  54294847 tcatataattctttgtgtaaacaagaataacaatt-aacaacttattcctccaatagga 54294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 42446520 - 42446445
Alignment:
Q  489 tcatctgggtacttaaatcaggacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 564  Q
    |||||| ||||||||||||| | ||| |||||||| |||  ||||||||||||||||||||||||||  |||||||    
T  42446520 tcatcttggtacttaaatcaagccaagctagttctccatcttttctaatgaagaatatttctcctttcatccccac 42446445  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 5709559 - 5709623
Alignment:
Q  193 agtttgcaaataaaatgagagtaaacattaaa---aaagatgcaaaagcaggatcaagtagtttc 254  Q
    ||||||||||||||| ||| | ||||||||||   ||| ||||||||||| ||||||||||||||    
T  5709559 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 5709623  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 2885860 - 2885796
Alignment:
Q  193 agtttgcaaataaaatgagagtaaacattaaaaa---agatgcaaaagcaggatcaagtagtttc 254  Q
    ||||||||||||||| ||| | ||||||||||||   | ||||||||||| ||||||||||||||    
T  2885860 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 2885796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 16186188 - 16186252
Alignment:
Q  193 agtttgcaaataaaatgagagtaaacattaaa---aaagatgcaaaagcaggatcaagtagtttc 254  Q
    ||||||||||||||| ||| | ||||||||||   ||| ||||||||||| ||||||||||||||    
T  16186188 agtttgcaaataaaacgagcgaaaacattaaaaataaaaatgcaaaagcaagatcaagtagtttc 16186252  T

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