View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4482-Insertion-3 (Length: 718)
Name: NF4482-Insertion-3
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482-Insertion-3 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 683; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 4876930 - 4876219
Alignment:
| Q |
7 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876930 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
4876831 |
T |
|
| Q |
107 |
tcttcatgtcatctatatttccagcccaatcactgtcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876830 |
tcttcatgtcatctatatttccagcccaatcactatcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
4876731 |
T |
|
| Q |
207 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876730 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
4876631 |
T |
|
| Q |
307 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876630 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
4876531 |
T |
|
| Q |
407 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcnnnnnnnttccatcctcagattg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4876530 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcaaaaaaattccattctcagattg |
4876431 |
T |
|
| Q |
507 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876430 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
4876331 |
T |
|
| Q |
607 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876330 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
4876231 |
T |
|
| Q |
707 |
tgaatccttgat |
718 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4876230 |
tgaatccttgat |
4876219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 30189547 - 30188836
Alignment:
| Q |
7 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30189547 |
acatactctgcttcagccgtagattgagctacaatttcttgtttcctcgagttctatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
30189448 |
T |
|
| Q |
107 |
tcttcatgtcatctatatttccagcccaatcactgtcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
30189447 |
tcttcatgtcatctatatttccagcccaatcactatcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaatttattagtacc |
30189348 |
T |
|
| Q |
207 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30189347 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggactctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
30189248 |
T |
|
| Q |
307 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
406 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30189247 |
ctagatgaagtaagataaagtagacttccaatcaaacttctataatgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
30189148 |
T |
|
| Q |
407 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcnnnnnnnttccatcctcagattg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
30189147 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcatgagcattcttctcttgattcaaaaaaattccactctcagattg |
30189048 |
T |
|
| Q |
507 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
606 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30189047 |
atgcacttccaagccaagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgatgtacttcttgttgatta |
30188948 |
T |
|
| Q |
607 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
706 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30188947 |
ttgcttgttactagcaggtcatcaacatacaaagagacaattaaggaaccaccatccaacaagcttcttacataaagagttgcatcattttcactccttt |
30188848 |
T |
|
| Q |
707 |
tgaatccttgat |
718 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30188847 |
tgaatccttgat |
30188836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Original strand, 17439913 - 17440624
Alignment:
| Q |
7 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439913 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
17440012 |
T |
|
| Q |
107 |
tcttcatgtcatctatatttccagcccaatcactgtcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17440013 |
tcttcatgtcatctatatttccagcccaatcactatcaacatagcctaacaaactttcattttcacttggcttgtaccatattccaaattgagtagtacc |
17440112 |
T |
|
| Q |
207 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440113 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
17440212 |
T |
|
| Q |
307 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440213 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
17440312 |
T |
|
| Q |
407 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcnnnnnnnttccatcctcagattg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17440313 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcaaaaaaattccattctcagattg |
17440412 |
T |
|
| Q |
507 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440413 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
17440512 |
T |
|
| Q |
607 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440513 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
17440612 |
T |
|
| Q |
707 |
tgaatccttgat |
718 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17440613 |
tgaatccttgat |
17440624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 7 - 718
Target Start/End: Complemental strand, 3062287 - 3061576
Alignment:
| Q |
7 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062287 |
acatactttgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
3062188 |
T |
|
| Q |
107 |
tcttcatgtcatctatatttccagcccaatcactgtcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062187 |
tcttcatgtcatctatatttccagcccaatcactatcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
3062088 |
T |
|
| Q |
207 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3062087 |
cttaacatatctaagtaccctctttgctgcaacaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgatgcatacataagatcaggt |
3061988 |
T |
|
| Q |
307 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaattttttcagcttcatcttcctttgagagtttcaaattccaca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061987 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaatttttccagcttcatcttcctttgagagtttcaaattccaca |
3061888 |
T |
|
| Q |
407 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcnnnnnnnttccatcctcagattg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
3061887 |
ccaaaggagttggagcagatttgcagctttccattttaaacttcttcaaaacttcacgagcatacttctcttgattcaaaaaaattccattctcagattg |
3061788 |
T |
|
| Q |
507 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061787 |
atgcacttccaagccgagaaaatagttcatttcccctaagctagacatctcaaactggtttttcatctcctccataagttgttgaacttcttgttgatta |
3061688 |
T |
|
| Q |
607 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3061687 |
ttgcttgttactagcaagtcatcaacatacaaagagacaattaaggaaccaccatccaacaatcttcttacataaagagttgcatcattttcactccttt |
3061588 |
T |
|
| Q |
707 |
tgaatccttgat |
718 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3061587 |
tgaatccttgat |
3061576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 26083410 - 26083769
Alignment:
| Q |
7 |
acatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083410 |
acatactctacttcagccgtggattgagctacaatttcttgtttcctcgagttccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtac |
26083509 |
T |
|
| Q |
107 |
tcttcatgtcatctatatttccagcccaatcactgtcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083510 |
tcttcatgtcatgtatatttccagcccaatcactatcaacatagcctaacaaactttcattttcacttggcttgtaccatattccgaattgagtagtacc |
26083609 |
T |
|
| Q |
207 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggattctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083610 |
cttaacatatctaagtaccctctttgctgcagcaaaatgtgtcttggtaggactctgcataaatcttgagagtaagcttgctgcatacataagatcaggt |
26083709 |
T |
|
| Q |
307 |
ctagatgaagtaagatagagtagactcccaatcaaacttctataacgagaagcatcaatt |
366 |
Q |
| |
|
| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26083710 |
caagatgaagtaagataaagtagacttacaatcaaacttctataacgagaagcatcaatt |
26083769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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