View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4482-Insertion-5 (Length: 550)
Name: NF4482-Insertion-5
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 24 - 515
Target Start/End: Complemental strand, 1735074 - 1734582
Alignment:
| Q |
24 |
caattatttcttctgcat-cataagataggagatatctggaccctctctacctgctttcataagttcatacaaagaacaaacaaggagacattgtgtccc |
122 |
Q |
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| T |
1735074 |
caattttttcttctgcaaacataagataggagatatatggaccctctctacctgctttcatcagttcatacaaagaacaaacaaggagacattgtgtccc |
1734975 |
T |
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| Q |
123 |
cttgataaataccacattttggcatgaagaaattagatctagcaccacccccaagacattcatttgcactaatgtcacgcaattcataatgaaattcacc |
222 |
Q |
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| T |
1734974 |
cttgataaataccacattttggcatgaagaaattagatctagcaccacccacaagacattcatttgcactaatgtcacgcaattcataatgaaattcacc |
1734875 |
T |
|
| Q |
223 |
atagttggggggagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccgtagcaagataaacttttgattgcaaaatag |
322 |
Q |
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| T |
1734874 |
atagttgggggaagaccaatttgcgttagcacattatgaataaacgaccatttgatagaatcataaaccttagcaagataaacttttgattgcaaaatag |
1734775 |
T |
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| Q |
323 |
ccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggtacaaaatccgtgccataca |
422 |
Q |
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| T |
1734774 |
ccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaatactctcacttattttcctcctcggtacaaaatccgtgcaataca |
1734675 |
T |
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| Q |
423 |
aagacttctcaaaagatcctccattcaagtactagtttcgtccaactagtttaactccggagttctgatgatatattttacgagtattgatac |
515 |
Q |
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| T |
1734674 |
aagacttctcagaagatcatccattcaagtactactttcgtccaacaagtttaactgtggagttctgatgatatattttactagtattgatac |
1734582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 48577580 - 48577508
Alignment:
| Q |
307 |
tttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaata |
379 |
Q |
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|||||||||||||||| |||| || ||| ||||||||||||||||||| || |||| || | | ||||||||| |
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| T |
48577580 |
tttgattgcaaaatagacaattttgcttttcattttagccatactatgtagaatctactaagcgataacaata |
48577508 |
T |
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