View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4482_low_5 (Length: 436)
Name: NF4482_low_5
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 49179559 - 49179965
Alignment:
| Q |
14 |
cagatcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaac |
113 |
Q |
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| T |
49179559 |
cagatcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaac |
49179658 |
T |
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| Q |
114 |
attagccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagtt |
213 |
Q |
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| T |
49179659 |
attagccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagtt |
49179758 |
T |
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| Q |
214 |
gaaggacataggattgtctctacatacaaatgaaatcgaaagaagccttttaatatgatctaatttgacggctaactgccattatggtggaagaactttg |
313 |
Q |
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| T |
49179759 |
gaaggacataggattgtctctgcatacaaatgaaatggaaagaagccttttaatatgatctaatttgacggttaactgccattatggtggaagaactttg |
49179858 |
T |
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| Q |
314 |
caatttatgtttcattactggatggatgtattatttattttattgaatagttttaactgtaatactaacttaattgtctattcttagctatggataaatt |
413 |
Q |
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| T |
49179859 |
caatttatgtttcattattggatggatgtatta-ttattttattgaatagttttaactgtaatattaacttaattgtctattcttagctatggataaatt |
49179957 |
T |
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| Q |
414 |
tagttgct |
421 |
Q |
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| T |
49179958 |
tagttgct |
49179965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 49170564 - 49170155
Alignment:
| Q |
17 |
atcatgtactataaactatgaaggccgggaagatgaacttcgatttacaaaatatattctactgaatgcgcggcttttaggggtcatgaaaatcaacatt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| | | ||||||||||||||||||||||||| | |||| | | |
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| T |
49170564 |
atcatgtactataaactatgaaggcttggaagatgaacttcaatttgcaaaatatattttgcagaatgcgcggcttttaggggtcatgcagatcaccggt |
49170465 |
T |
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| Q |
117 |
agccattcatcaaatccaaagccaaatcggcgtattttaaaagaagagttatcctcgtttccaaggatttctcgcaaatgtaagctttcagttagttgaa |
216 |
Q |
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| || || || | |||||||| || || |||| ||||| |||| ||||| ||||||||||||| | ||||||| |||||| || |||||| |
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| T |
49170464 |
acttttttatttaaacaaaagccaagtctgcaacctttacaagaa---ttatactcgtgtccaaggatttcttccgaatgtaaactttcaattggttgaa |
49170368 |
T |
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| Q |
217 |
ggacataggattgtctctacatacaaatgaaatcgaaagaagccttttaatatgatctaatttgacggctaactgccattatggtggaagaactttgca- |
315 |
Q |
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| T |
49170367 |
ggacataggattgtctctacatacaaatgaacgggaaagaaggttcttaatatgatctaatttgacagcgaacagccattatggtggaagaactttgcat |
49170268 |
T |
|
| Q |
316 |
-------atttatgtttcattactggatggatgtattatttattttattgaatagttttaactgtaatactaacttaattgtctattcttagctatggat |
408 |
Q |
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|||||| |||||| | ||||||| ||||| |||||||||||||| ||||| | ||||||| ||| |||| ||||||| ||||||| | | |
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| T |
49170267 |
tttatcgttttatgcttcattttttgatggatatatta-ttattttattgaatggtttttattgtaatattaaactaatggtctatttttagctactggt |
49170169 |
T |
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| Q |
409 |
aaatttagttgctg |
422 |
Q |
| |
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|||||||||||||| |
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| T |
49170168 |
aaatttagttgctg |
49170155 |
T |
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