View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4482_low_7 (Length: 397)
Name: NF4482_low_7
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 24906978 - 24906600
Alignment:
| Q |
7 |
ttagattggctagctttgatggatcagctacttttgacatagatttcaacagaaaaactgcgtatgttcttgaatcgtagttacctttttgtaataatct |
106 |
Q |
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||||||| ||||| |||||||||||||| |||||||| |||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24906978 |
ttagattcgctagttttgatggatcagcaacttttgatatagatttcagcaaacaaactgcgtatgttcttgaatcgtagttacccttttgtaataatct |
24906879 |
T |
|
| Q |
107 |
cattagagagtctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgttgatagcttcatct |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24906878 |
cattaaagagtctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatct |
24906779 |
T |
|
| Q |
207 |
tctgcacctattttgaagtcaaaagcaaaaccgtcaacatcatcatcatcaaagctagcttcaattaattccgttgttgaacatgaagatgaacaaccag |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
24906778 |
tctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaagatgaacaacttg |
24906679 |
T |
|
| Q |
307 |
tgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctatttgtttcgctctc |
385 |
Q |
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| T |
24906678 |
tgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctc |
24906600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 385
Target Start/End: Original strand, 24890448 - 24890826
Alignment:
| Q |
7 |
ttagattggctagctttgatggatcagctacttttgacatagatttcaacagaaaaactgcgtatgttcttgaatcgtagttacctttttgtaataatct |
106 |
Q |
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||||||| ||||| ||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||| ||||||||||| |||||||||||| | |
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| T |
24890448 |
ttagatttgctagttttgatggatcagctacttttgatatagatttcatcatataaactgcgtatgttcttgattcgtagttacccttttgtaataattt |
24890547 |
T |
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| Q |
107 |
cattagagagtctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgttgatagcttcatct |
206 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24890548 |
tattaaagagtctataaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatct |
24890647 |
T |
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| Q |
207 |
tctgcacctattttgaagtcaaaagcaaaaccgtcaacatcatcatcatcaaagctagcttcaattaattccgttgttgaacatgaagatgaacaaccag |
306 |
Q |
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| T |
24890648 |
tctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaagatgaacaacttg |
24890747 |
T |
|
| Q |
307 |
tgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctatttgtttcgctctc |
385 |
Q |
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| T |
24890748 |
tgttgttttgtgttactattgatgctaaaaactcgacagcgcctgccgattcgatacaccgtctatttgtttcgctctc |
24890826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 24899519 - 24899141
Alignment:
| Q |
7 |
ttagattggctagctttgatggatcagctacttttgacatagatttcaacagaaaaactgcgtatgttcttgaatcgtagttacctttttgtaataatct |
106 |
Q |
| |
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||||||| ||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || || || ||| |
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| T |
24899519 |
ttagattagctagatttgatggatcagcaacttttgaaatagatttcaacaaaaaaactgcgtatgttcttgaatcgtagttacccttatgaaaaaataa |
24899420 |
T |
|
| Q |
107 |
cattagagagtctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgttgatagcttcatct |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24899419 |
aattaaagagtctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatct |
24899320 |
T |
|
| Q |
207 |
tctgcacctattttgaagtcaaaagcaaaaccgtcaacatcatcatcatcaaagctagcttcaattaattccgttgttgaacatgaagatgaacaaccag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
24899319 |
tctgcacctattttgaagtcaaaagcaaaaccttcaacatcatcatcatcaaagctagcttcaattaattctgttgctgaacatgaagatgaacaacttg |
24899220 |
T |
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| Q |
307 |
tgttgttttttgttactattgatgctaagaactcaacagcgccggccgattcgatacaccgtctatttgtttcgctctc |
385 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24899219 |
tgttgttttgtgttactattgatgctaaaaactcgacagcgccagccgattcgatacaccgtctatttgtttcgctctc |
24899141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 5285163 - 5284965
Alignment:
| Q |
36 |
acttttgacatagatttcaacagaaaaactgcgtatgttcttgaatcgtagttacctttttgtaataatctcattagagagtctaaaaattctccatttt |
135 |
Q |
| |
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|||||||| ||||||||||||| |||| ||| | |||||||||||| ||||||||| || || ||||||||| ||||||||||||||||| ||||| |
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| T |
5285163 |
acttttgatatagatttcaacataaaa-ctgtgcatgttcttgaattgtagttacccgcttagaaaaatctcattgaagagtctaaaaattctctatttt |
5285065 |
T |
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| Q |
136 |
tgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgttgatagcttcatcttctgcacctattttgaagtcaaaagcaaa |
235 |
Q |
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| T |
5285064 |
ttaagttaaagagtgtta--aaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctattttgaactcaaaagcaaa |
5284967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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