View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4482_low_8 (Length: 340)
Name: NF4482_low_8
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 11119678 - 11119365
Alignment:
| Q |
19 |
tggatgcaagaggatgattatctaataatggggaatgttgnnnnnnncacagacataacttgtgacggaaagagaggatatactataat-----gaaaat |
113 |
Q |
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| T |
11119678 |
tggatgcaagaggatgatcatctaataatgggaaatgttgaaaaaaacaaagacataacttgtgacggaaagagaggatatactataatataatgaaaat |
11119579 |
T |
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| Q |
114 |
tacttagnnnnnnnnngg-ttatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaatt |
212 |
Q |
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| T |
11119578 |
tacttagaaaaaaaaaagattatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaatt |
11119479 |
T |
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| Q |
213 |
ccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatatccccctccgttgattctgaggccacactagcaagatcc |
312 |
Q |
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| T |
11119478 |
ccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatatccccctccattgattctgaggtcacactagcaagatcc |
11119379 |
T |
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| Q |
313 |
aattcagaagattt |
326 |
Q |
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| T |
11119378 |
aattcagaagattt |
11119365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 326
Target Start/End: Complemental strand, 11111747 - 11111594
Alignment:
| Q |
172 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
271 |
Q |
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|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
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| Q |
272 |
tatccccctccgttgattct---gaggccacactagcaagatccaattcagaagattt |
326 |
Q |
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| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagattt |
11111594 |
T |
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