View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4482_low_9 (Length: 260)
Name: NF4482_low_9
Description: NF4482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4482_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 37595941 - 37595673
Alignment:
| Q |
1 |
tatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatatag |
100 |
Q |
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| T |
37595941 |
tatcaagctattgaaccaagggaacttcagaaaacatctacacataatgtttttcaggtttgttaaattcacattttctactacactaggtcaaatatag |
37595842 |
T |
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| Q |
101 |
agcaaatttcannnnnnncatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595841 |
agcaaatttcatttttttcatctacattatatatgtagcatggctttaaattgtggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaa |
37595742 |
T |
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| Q |
201 |
ccttttaggt----------------aaaccatgatataatatatgtaggttgaattagtgtcttctct |
253 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595741 |
ccttttaggttgtcgaccacaatttaaaaccatgatataatatatgtaggttgaattagtgtcttctct |
37595673 |
T |
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