View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4483-Insertion-4 (Length: 220)

Name: NF4483-Insertion-4
Description: NF4483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4483-Insertion-4
NF4483-Insertion-4
[»] scaffold0023 (1 HSPs)
scaffold0023 (8-188)||(95705-95892)
[»] chr5 (7 HSPs)
chr5 (8-178)||(26994511-26994688)
chr5 (8-77)||(22903102-22903173)
chr5 (8-75)||(25537414-25537483)
chr5 (8-77)||(27083249-27083319)
chr5 (45-77)||(34493561-34493593)
chr5 (9-71)||(19993182-19993246)
chr5 (13-75)||(24647302-24647366)
[»] chr2 (15 HSPs)
chr2 (8-190)||(12127556-12127745)
chr2 (8-77)||(24499798-24499869)
chr2 (8-77)||(3586372-3586443)
chr2 (8-77)||(27846530-27846601)
chr2 (8-77)||(36267507-36267578)
chr2 (13-77)||(12168986-12169053)
chr2 (20-73)||(15825175-15825230)
chr2 (8-77)||(45715004-45715075)
chr2 (8-75)||(29711027-29711094)
chr2 (8-75)||(18770323-18770392)
chr2 (8-206)||(45258029-45258234)
chr2 (8-77)||(24755477-24755548)
chr2 (8-76)||(10923177-10923247)
chr2 (35-77)||(19919077-19919121)
chr2 (8-77)||(20120356-20120427)
[»] scaffold0054 (1 HSPs)
scaffold0054 (8-189)||(68696-68882)
[»] chr7 (11 HSPs)
chr7 (8-213)||(5863196-5863408)
chr7 (19-188)||(39879407-39879584)
chr7 (8-77)||(7486554-7486625)
chr7 (8-77)||(21161250-21161321)
chr7 (8-190)||(26762804-26762993)
chr7 (8-77)||(9135372-9135443)
chr7 (8-77)||(9867950-9868021)
chr7 (9-75)||(5929024-5929092)
chr7 (7-77)||(12644793-12644866)
chr7 (8-75)||(13292136-13292205)
chr7 (8-77)||(29373455-29373526)
[»] chr8 (13 HSPs)
chr8 (8-199)||(30477650-30477848)
chr8 (8-190)||(18322952-18323141)
chr8 (19-154)||(26916827-26916969)
chr8 (8-77)||(6928101-6928172)
chr8 (8-77)||(21416747-21416818)
chr8 (95-204)||(5859918-5860027)
chr8 (8-77)||(24507466-24507537)
chr8 (8-77)||(13754767-13754838)
chr8 (8-77)||(17698296-17698367)
chr8 (8-77)||(17927715-17927786)
chr8 (13-77)||(24070866-24070932)
chr8 (8-73)||(3459498-3459566)
chr8 (14-80)||(13765004-13765072)
[»] chr6 (19 HSPs)
chr6 (8-77)||(20148326-20148395)
chr6 (8-77)||(22184433-22184502)
chr6 (8-199)||(30681001-30681199)
chr6 (8-190)||(18147315-18147504)
chr6 (8-77)||(19305473-19305544)
chr6 (9-77)||(689868-689938)
chr6 (8-54)||(19730627-19730673)
chr6 (8-77)||(14268440-14268511)
chr6 (13-77)||(3404873-3404939)
chr6 (8-75)||(16343588-16343657)
chr6 (8-54)||(25008426-25008472)
chr6 (8-75)||(31295548-31295617)
chr6 (8-54)||(34187308-34187354)
chr6 (7-48)||(13823419-13823460)
chr6 (7-77)||(15480352-15480424)
chr6 (8-74)||(22497312-22497380)
chr6 (9-82)||(14080494-14080568)
chr6 (24-77)||(16130993-16131048)
chr6 (8-77)||(17380106-17380177)
[»] chr4 (11 HSPs)
chr4 (8-77)||(47253286-47253357)
chr4 (8-77)||(12683794-12683865)
chr4 (8-77)||(19809710-19809781)
chr4 (8-62)||(13171088-13171142)
chr4 (8-77)||(2674585-2674652)
chr4 (8-54)||(15514597-15514643)
chr4 (20-77)||(19643723-19643782)
chr4 (12-76)||(29157115-29157181)
chr4 (96-190)||(2674467-2674561)
chr4 (8-75)||(15742166-15742235)
chr4 (20-77)||(14003075-14003134)
[»] chr3 (13 HSPs)
chr3 (8-77)||(17143760-17143831)
chr3 (8-77)||(30606937-30607008)
chr3 (8-199)||(9800969-9801165)
chr3 (18-77)||(21342298-21342359)
chr3 (8-75)||(1770834-1770903)
chr3 (8-75)||(12516194-12516263)
chr3 (8-77)||(431327-431398)
chr3 (16-77)||(16704419-16704482)
chr3 (16-77)||(28723785-28723848)
chr3 (8-75)||(12731574-12731643)
chr3 (11-77)||(13085084-13085152)
chr3 (35-77)||(28715499-28715543)
chr3 (8-77)||(2311845-2311916)
[»] chr1 (12 HSPs)
chr1 (8-77)||(5671779-5671850)
chr1 (8-76)||(33101519-33101589)
chr1 (8-77)||(12177395-12177466)
chr1 (8-190)||(34273096-34273284)
chr1 (8-76)||(16050403-16050473)
chr1 (8-77)||(26977749-26977820)
chr1 (8-80)||(23280270-23280342)
chr1 (8-77)||(22414784-22414855)
chr1 (8-77)||(52565589-52565660)
chr1 (8-75)||(1659802-1659871)
chr1 (22-77)||(16030418-16030475)
chr1 (10-54)||(14255066-14255110)
[»] scaffold0174 (1 HSPs)
scaffold0174 (8-77)||(29289-29358)
[»] scaffold0505 (1 HSPs)
scaffold0505 (8-188)||(7894-8081)
[»] scaffold0291 (2 HSPs)
scaffold0291 (8-77)||(15441-15512)
scaffold0291 (8-77)||(8588-8659)
[»] scaffold0294 (1 HSPs)
scaffold0294 (8-75)||(256-325)
[»] scaffold0103 (1 HSPs)
scaffold0103 (8-75)||(40805-40874)
[»] scaffold0360 (1 HSPs)
scaffold0360 (8-77)||(13931-14002)
[»] scaffold0464 (1 HSPs)
scaffold0464 (8-75)||(11525-11591)
[»] scaffold0140 (1 HSPs)
scaffold0140 (8-75)||(6307-6376)
[»] scaffold0205 (2 HSPs)
scaffold0205 (8-75)||(10928-10997)
scaffold0205 (8-75)||(22895-22964)
[»] scaffold0101 (1 HSPs)
scaffold0101 (8-52)||(10756-10800)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-75)||(121024-121075)


Alignment Details
Target: scaffold0023 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 95892 - 95705
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtg--tagaaagtgttgtgaaaagtgaataata------gggtgaacacaatgtcac 99  Q
    |||| |||| ||||||||||||  || |||||||||||||||||||  |||||||||||||||||||||||| |||      |||||||  ||| |||||    
T  95892 gttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcataccttcagggtgaag-caacgtcac 95794  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcct 188  Q
    ||||||| |||||| |||| |||||| |  ||| ||||||||||||||||||||| || |||||||||| |||| ||||| ||||||||    
T  95793 ccttatataggcacgcgtttggaatatctacctccgagttttgcggcgtgtgattagggacggttagaggacacatgtagagtgatcct 95705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 26994688 - 26994511
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtg--tagaaagtgttgtgaaaagtgaataata------gggtgaacacaatgtcac 99  Q
    ||||||||||| ||||||||||| || |||||| ||||||||||||  ||||| |||||||||||||||||| |||      |||||||  ||| |||||    
T  26994688 gttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttgggggtgaa-gcaaggtcac 26994590  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgta 178  Q
    ||||||| |||| | ||||| || |||||| |||||||||||||||||||||||| || ||| |||||| |||| ||||    
T  26994589 ccttatataggcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgattagggacgattagaggacacatgta 26994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 22903102 - 22903173
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||    
T  22903102 gttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 22903173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 25537414 - 25537483
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||||||||||||||  ||| ||||||||||||||||  |||||  ||||||||||||||||||    
T  25537414 gttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtga 25537483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 27083319 - 27083249
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||| |||||||| || | | ||||| ||||||||||  |||||||||||||||||||||||    
T  27083319 gttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtgaaaagtgaat 27083249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 34493561 - 34493593
Alignment:
Q  45 gaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||||||||||||||||||||||    
T  34493561 gaaagagtgtagaaagtgttgtgaaaagtgaat 34493593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 19993246 - 19993182
Alignment:
Q  9 ttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaa 71  Q
    |||||| |||||  |||||||| || ||||||||||||||||  |||| ||||||||||||||||    
T  19993246 ttagcagtccaatactcaagtcagtaatggaactgagaaagagcgtgttgaaagtgttgtgaaaa 19993182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24647302 - 24647366
Alignment:
Q  13 cactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||||||| || || |||||||||| |||||  |||||  ||||||||||||||||||    
T  24647302 cactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 24647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 12127745 - 12127556
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataatag------ggtgaacacaatgtcac 99  Q
    ||||||||||||||||||||||| || ||| |||| |||| | ||||  ||||||||||||||||||||||| |||       ||||||  ||||||||     
T  12127745 gttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtgaatcatactttggtggtgaag-caatgtcaa 12127647  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    ||||||| | |||| | ||| ||||| ||||||||||||||||  |||||||||| || ||||||||||||||| ||||| ||||||||||    
T  12127646 ccttatatatgcacgctttgagaatatccgccttcgagttttgtagcgtgtgattagggacggttagagaacacgtgtagagtgatcctcg 12127556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24499798 - 24499869
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || |||||| |||||||||  ||||||||| |||||||||||||||||    
T  24499798 gttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaat 24499869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 3586372 - 3586443
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagt--gtagaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||| ||||||||||| || |||||||||||||| |||  |||||||||||||||||||||||||    
T  3586372 gttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaat 3586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 27846601 - 27846530
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||| ||||||| || |||||||||||||| ||  |||||||||||||||| |||||||||    
T  27846601 gttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaat 27846530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 36267507 - 36267578
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||| |||||||||||||||||| || ||| ||||||||||||  |||||||||| ||||||||||||||||    
T  36267507 gttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaat 36267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 12168986 - 12169053
Alignment:
Q  13 cactccaacgct-caagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||| |||||| || |||||||| |||||||||||  |||||||||||||||||||||||    
T  12168986 cactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12169053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 15825175 - 15825230
Alignment:
Q  20 acgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagt 73  Q
    ||||||||||| || ||||||||||||||||  |||||||||||||||||||||||    
T  15825175 acgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 45715004 - 45715075
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||| ||||||||||||  ||||| ||||||| ||||||| |||||    
T  45715004 gttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtgaaaattgaat 45715075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 29711027 - 29711094
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||||||||||||||||  | |||||| ||| | ||||||||  ||||||||||||||||||    
T  29711027 gttagcactccaacgctcaagtcactaatggaattgaaagagagtgtacgaagtgttgtgaaaagtga 29711094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 18770323 - 18770392
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtga 75  Q
    ||||||||||  ||||||||||| || ||| || |||||||||||||  |||||||||||||||||||||    
T  18770323 gttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 45258234 - 45258029
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataata------gggtgaacacaatgtcac 99  Q
    |||| |||||||| ||||||||  || ||| |||| |||||||  |||| |||||||||||||||||||||| |||      |||||||  ||| |||||    
T  45258234 gttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaatcataccttgagggtgaag-caaagtcac 45258136  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatt-tggaacggttagagaacacttgtagcgtgatcctcgaacggggg 198  Q
    ||||||| |||  | |||   || |||||| || |||||||||||||||||||||  ||| ||||||||| |||| || || |||||||||| |||| ||    
T  45258135 ccttatataggtcctcgtgacga-taaccgtctccgagttttgcggcgtgtgattagggagcggttagaggacacatgcagggtgatcctcgcacggagg 45258037  T
Q  199 cgcgcttg 206  Q
    || |||||    
T  45258036 cgtgcttg 45258029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24755477 - 24755548
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaact--gagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||| |||||||| |||||||| || ||||||||  || |||| ||||||||| |||||||||||||||||    
T  24755477 gttagtactccaaccctcaagtcagtgatggaactctgaaaaagtgtgtagaaattgttgtgaaaagtgaat 24755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10923247 - 10923177
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaa 76  Q
    |||| |||||| || |||||||| ||||||||||| | |||||  |||||||||||| |||||||||||||    
T  10923247 gttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtgaa 10923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 19919121 - 19919077
Alignment:
Q  35 atggaactgagaaagagt--gtagaaagtgttgtgaaaagtgaat 77  Q
    |||||| |||||||||||  |||||||||||||||||||||||||    
T  19919121 atggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaat 19919077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20120356 - 20120427
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| || |||||||| || ||| ||||||||||||  |||| ||||||| ||||| ||||||||    
T  20120356 gttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaat 20120427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 68882 - 68696
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcaccc 101  Q
    ||||||||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||| ||      |||| |||  ||| |||||||    
T  68882 gttagcactccaacgctcaagttagtaatggaactgagaaagagtatagaaagtgttgtgaaaagtgaatcataccttgagggagaa-gcaaggtcaccc 68784  T
Q  102 ttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctc 189  Q
    ||||| |||||| ||||| ||||||| ||||  | |||| ||||| ||||||| |||  ||||| || ||||  |||| |||||||||    
T  68783 ttatataggcacgcgttgagaataactgcctctgggtttcgcggcatgtgattaggattggttataggacacgcgtagagtgatcctc 68696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 5863196 - 5863408
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataata------gggtgaacacaatgtcac 99  Q
    |||||||||| |||||||||||| || || |||||||||||||||||  ||||| |||||| |||||||||| |||      ||||| |  |||||||||    
T  5863196 gttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcataccttgagggtggag-caatgtcac 5863294  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcgaacgggggc 199  Q
    |||| || |||| | |||||| ||||||||||| || ||||  |||| ||||||| || |||||||||| |||| |||| |||||||||||  || || |    
T  5863295 ccttgtataggcgcgcgttggaaataaccgcctccgggtttcacggcatgtgattagggacggttagaggacacgtgtaacgtgatcctcgtgcgaggtc 5863394  T
Q  200 gcgcttgtgtgtgt 213  Q
    || |||||||||||    
T  5863395 gcacttgtgtgtgt 5863408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 39879407 - 39879584
Alignment:
Q  19 aacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcacccttatagagg 110  Q
    |||||||||||| || ||| ||||||||||||||||  | |||||||||| |||||||||| ||      |||| | |  |||||||||||||||| ||     
T  39879407 aacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtgaatcatgccatgaggggggaagcaatgtcacccttatataga 39879506  T
Q  111 cacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcct 188  Q
    | ||| |||| ||||||||||| ||| ||||||||||||||||| |||||  || ||| |||| | ||||||||||||    
T  39879507 cgcacattggaaataaccgcctccgaattttgcggcgtgtgattaggaacatttggaggacacctatagcgtgatcct 39879584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 7486554 - 7486625
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||||||||| || || ||||||||||||||||  |||||||| ||||||||||||||||||    
T  7486554 gttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaat 7486625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 21161250 - 21161321
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaa--gagtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||||| || |||||  | |||||||||||||||||||||||||||    
T  21161250 gttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtgaat 21161321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 26762993 - 26762804
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    ||||||||||||||||||||||| || | |||||| | ||| |||||  ||||||||||||||||||||||| ||      ||||||||  ||| | |||    
T  26762993 gttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa-gcaaggacac 26762895  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    || |||| |||| |  ||||   |||||| ||| || |||||| ||||||||||| || |||||||||| |||||||||  ||||||||||    
T  26762894 ccatatataggcgcgtgttgttgataaccacctccgggttttggggcgtgtgattagggacggttagaggacacttgtatggtgatcctcg 26762804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 9135443 - 9135372
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||| |||||||||||| || |||||| |||||||||  ||||| ||| |||||||||||||||||    
T  9135443 gttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaat 9135372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 9868021 - 9867950
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||  ||||||||||| || ||||||||||| |||||  ||||||||||||||| ||||||||||    
T  9868021 gttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtgaat 9867950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 5929092 - 5929024
Alignment:
Q  9 ttagcactccaacgctcaagtctgttatggaactg--agaaagagtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||||| |||||||| || |||||||||  ||| ||||||||  ||||||||||||||||||    
T  5929092 ttagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 5929024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 12644793 - 12644866
Alignment:
Q  7 agttagcactccaacgctcaagtctgttatggaactgag--aaagagtgtagaaagtgtt-gtgaaaagtgaat 77  Q
    |||||||||||| ||||||| ||| || |||||||||||  |||| |||| ||||||||| |||||||||||||    
T  12644793 agttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtgaat 12644866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 13292205 - 13292136
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||| |||||||||||| || ||| |||||| |||||  |||||  ||||||||||||||||||    
T  13292205 gttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 13292136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 29373455 - 29373526
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||||| ||||||||| ||| || || |||||||||  ||||||||| ||||||||||| |||||    
T  29373455 gttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgtgtagaaaatgttgtgaaaattgaat 29373526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 30477650 - 30477848
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    ||||||||||||||||||||||| || | | ||||||||||||  ||||||||||||||||||||||||||| ||      ||||||||   ||||||||    
T  30477650 gttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa-gtaatgtcac 30477748  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcgaacgggggc 199  Q
    ||||||| ||||   ||| | ||||||||||||  ||||||||  ||||||||||  |||  ||||||| |||| ||||| |||| |||||  |||||||    
T  30477749 ccttatataggcgtgcgtcgagaataaccgcctctgagttttgttgcgtgtgattaagaatagttagaggacacatgtagggtgaacctcgtgcgggggc 30477848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 18322952 - 18323141
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    |||| |||||||||||||||||| || || |||||||||||||  ||||||||| ||||||||||||||||| ||      ||| ||||  ||| |||||    
T  18322952 gttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatcatacattgaggatgaa-gcaaggtcac 18323050  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    ||||||| |||||   |||| ||||||| |||| || |||| ||||||||||||| || | |||||||| ||||  ||||| |||||||||    
T  18323051 ccttatataggcaagagttgagaataactgcctccgggtttcgcggcgtgtgattagggatggttagaggacacacgtagcatgatcctcg 18323141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 26916969 - 26916827
Alignment:
Q  19 aacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataatagggtgaaca-----caatgtcacccttatagaggc 111  Q
    |||||||||||| || |||||||||||| |||||||  ||||||||||||||||||||| | |||   ||| ||     ||||||| |||||||| ||||    
T  26916969 aacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcataccttgagcatgaagcaatgtcgcccttatataggc 26916870  T
Q  112 acacgttgggaataaccgccttcgagttttgcggcgtgtgatt 154  Q
     | ||||| |||||||||||| |  ||||||||||||||||||    
T  26916869 gcgcgttgagaataaccgcctccaggttttgcggcgtgtgatt 26916827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6928172 - 6928101
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||| | |||| |||||||| || ||||||||||||||||||||  |||||||||||||||||||||||    
T  6928172 gttagcatttcaacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 6928101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 21416747 - 21416818
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| ||||||||||| || ||| ||||||||||||  ||||||||||||||||||||| |||||    
T  21416747 gttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaat 21416818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 5859918 - 5860027
Alignment:
Q  95 gtcacccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcgaacg 194  Q
    |||||||||||| |||| | |||||| |||||||||||  |  |||||||||| |||||| || ||||||| |  |||| ||||| |||||||||| |||    
T  5859918 gtcacccttatataggcgcgcgttggaaataaccgcctctggattttgcggcgagtgattagggacggttaaatgacacgtgtagagtgatcctcgcacg 5860017  T
Q  195 ggggcgcgct 204  Q
    ||| ||||||    
T  5860018 gggacgcgct 5860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 24507466 - 24507537
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||||||| |||||||  | |||||| |||||||||||||  |||||||||||||||||||||||    
T  24507466 gttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaat 24507537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13754767 - 13754838
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||| |||| || |||||||||| || ||| ||||||||||||  ||||||||||||||||| |||||||||    
T  13754767 gttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaat 13754838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 17698367 - 17698296
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||| ||||||   |||||| || ||||||| ||||||||||||  |||||||||||||||||||||||    
T  17698367 gttagcattccaacatgcaagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 17698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 17927786 - 17927715
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||| ||||| || ||||||||||||  |||  ||||||||||||| ||||| ||||||    
T  17927786 gttagcactccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgttatgaaaggtgaat 17927715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24070866 - 24070932
Alignment:
Q  13 cactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| || ||||| || |||||||| |||||||||||  |||||||||||||| ||||||||    
T  24070866 cactccaacacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaat 24070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 3459566 - 3459498
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgtt-gtgaaaagt 73  Q
    |||||||||||  |||||||||| || ||||||||||| ||||  |||||||||||||| |||||||||    
T  3459566 gttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagt 3459498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 13765004 - 13765072
Alignment:
Q  14 actccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataat 80  Q
    ||||||| | ||||||  || ||| ||||||||||||||||  ||||||||||||| ||||||||||||    
T  13765004 actccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaataat 13765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 20148326 - 20148395
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||    
T  20148326 gttagcactccatcgctcaagttagtaatggaattgagaaagagtgtagaaagtgttgtgaaaagtgaat 20148395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22184502 - 22184433
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||| |||||||||  || |||||| ||||||||||||||||||||||||||||||||||||    
T  22184502 gttagcactccatcgctcaagttagtaatggaattgagaaagagtgtagaaagtgttgtgaaaagtgaat 22184433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 30681001 - 30681199
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    ||||||||||||||||||||||| || ||| |||||| |||||  |||||||| || ||||||||||||||| ||      ||| ||||  |||||||||    
T  30681001 gttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtgaaaagtgaatcataccttgaggatgaa-gcaatgtcac 30681099  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcgaacgggggc 199  Q
    | ||| | |||| | ||||| |||||||||||| ||||||||||||||||||||| | || ||||| |  |||| ||||   ||||||||| ||||||||    
T  30681100 ctttagataggcgcgcgttgagaataaccgcctccgagttttgcggcgtgtgattagaaaaggttaaaagacacgtgtacaatgatcctcgcacgggggc 30681199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 18147315 - 18147504
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataa------tagggtgaacacaatgtcac 99  Q
    |||| ||||||||||||||||||  | ||||||| ||||||||  ||||||||||||||||||||||||| | |      |||||||||  |||||||||    
T  18147315 gttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactcatacctttagggtgaa-gcaatgtcac 18147413  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    ||||||| |||  | | |||||| |||||||||  | ||||||| |||||||||| || |||||||||| |||  ||||  ||||||||||    
T  18147414 ccttatataggtgcgcattgggattaaccgcctctgggttttgcagcgtgtgattagggacggttagaggacatgtgtaaggtgatcctcg 18147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19305473 - 19305544
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||  |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||||||    
T  19305473 gttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaat 19305544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 689938 - 689868
Alignment:
Q  9 ttagcactccaacgctcaagtctgttatggaactgagaaa--gagtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||| ||| ||||||||| || ||||||||||||||  | ||||| |||||||||||||||||||||    
T  689938 ttagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaat 689868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 19730673 - 19730627
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt 54  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||    
T  19730673 gttagcactccaacgctcaagtcaataatggaactgagaaagagtgt 19730627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 14268440 - 14268511
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaact--gagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||| ||||| || ||||||||  || | || |||||||||||||| ||||||||||||    
T  14268440 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaat 14268511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 3404939 - 3404873
Alignment:
Q  13 cactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||| || ||||| || ||||||||||||||||||||  ||||||||||||||||| |||||    
T  3404939 cactctaacacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaat 3404873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 16343588 - 16343657
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaag--agtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||||||| |||||||| || |||||||||||| ||  ||||||  |||||||||| |||||||    
T  16343588 gttagcactccaacactcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtga 16343657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 25008472 - 25008426
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt 54  Q
    |||| |||||||||||||||||| || |||||| |||||||||||||    
T  25008472 gttaacactccaacgctcaagtcagtaatggaattgagaaagagtgt 25008426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 31295617 - 31295548
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||| | ||||||||||| || ||| ||||||||||||  |||||  ||||||||||||||||||    
T  31295617 gttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34187308 - 34187354
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt 54  Q
    |||||||| ||||| |||||||| || ||||||||||||||||||||    
T  34187308 gttagcacaccaacactcaagtcagtaatggaactgagaaagagtgt 34187354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 13823460 - 13823419
Alignment:
Q  7 agttagcactccaacgctcaagtctgttatggaactgagaaa 48  Q
    |||||||||||||||| ||||||| || ||||||||||||||    
T  13823460 agttagcactccaacgatcaagtcagtaatggaactgagaaa 13823419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 15480424 - 15480352
Alignment:
Q  7 agttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||| ||| ||||||||  | ||| |||||||||| |||||  |||||||||||||||||||||||    
T  15480424 agttatcactcgaactctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaat 15480352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 22497380 - 22497312
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactg--agaaagagtgtagaaagtgttgtgaaaagtg 74  Q
    ||||||||||| ||||||||||| || ||||||| |  ||| ||||| || ||||||||||||||||||    
T  22497380 gttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttgtgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 14080494 - 14080568
Alignment:
Q  9 ttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataatag 82  Q
    |||||||||  ||||||||||  || ||| ||||||||||||||||  || |||||||||||||||||||| ||||    
T  14080494 ttagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtgaatcatag 14080568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 16130993 - 16131048
Alignment:
Q  24 tcaagtctgttatggaactgagaaagagtgta--gaaagtgttgtgaaaagtgaat 77  Q
    ||||||| || |||||||||| ||||||||||  ||||||||||||||| ||||||    
T  16130993 tcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaat 16131048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 17380106 - 17380177
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||||| |  |||||| || || |||||||||||||||||  | |||||||||||||||||||||    
T  17380106 gttagtactccaatgtccaagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtgaat 17380177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 47253286 - 47253357
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||||||||||||||||  ||||| |||||||||||||||||||||    
T  47253286 gttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaat 47253357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 12683794 - 12683865
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||  || ||| ||||||||||||  |||||||||||||||||||||||||||    
T  12683794 gttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12683865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19809710 - 19809781
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||| |||| |||||||  |||||||||||||||||||||||||||    
T  19809710 gttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaat 19809781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 13171088 - 13171142
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtg 62  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||    
T  13171088 gttagcactccaactctcaagtcagtaatggaactgagcaagagtgtagaaagtg 13171142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2674652 - 2674585
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||||| ||||||  | ||| ||||||||  | |||||||||||||||||||||||||||    
T  2674652 gttagcactccaacgcacaagtcaataatgtaactgaga--gtgtgtagaaagtgttgtgaaaagtgaat 2674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 15514643 - 15514597
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt 54  Q
    ||||||||||||||||||||||| || |||||||||| |||||||||    
T  15514643 gttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgt 15514597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 19643723 - 19643782
Alignment:
Q  20 acgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||| || ||||||||||||||||  ||||||||||| |||||||||||||||    
T  19643723 acgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaat 19643782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29157115 - 29157181
Alignment:
Q  12 gcactccaacgctcaagtctgttatggaactgag--aaagagtgtagaaagtgttgtgaaaagtgaa 76  Q
    ||||||||||||||||||  || |||||||||||  |||| |||||| |||||||||| ||||||||    
T  29157115 gcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaa 29157181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 2674561 - 2674467
Alignment:
Q  96 tcacccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    ||||||||||| | || | ||||| | ||||||| || ||  ||||||||||||||||| || || ||||||| |||| ||||| ||||||||||    
T  2674561 tcacccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattagggacagttagaggacacgtgtagggtgatcctcg 2674467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 15742235 - 15742166
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgag--aaagagtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||  ||||||||||| || |||||||||||  |||| |||||  ||||||||||||||||||    
T  15742235 gttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 14003134 - 14003075
Alignment:
Q  20 acgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| || |||||||||||||||||  ||| ||||||||| |||||| |||||    
T  14003134 acgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatgaaaaatgaat 14003075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 17143831 - 17143760
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| ||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||    
T  17143831 gttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 17143760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 30606937 - 30607008
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagt--gtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||| ||||||||||||||| || |||||| |||||||||||  |||||||||||||||||||||||||    
T  30606937 gttagcattccaacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaat 30607008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 9801165 - 9800969
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    |||||||||| ||| |||||||| || || |||| ||||||||||||  ||||||||||||||||||||||| ||      ||||||||  |||||||||    
T  9801165 gttagcactc-aacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa-gcaatgtcac 9801068  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcgaacgggggc 199  Q
    ||||||| |||||| | ||   |||   ||| |||| |||||||||||||||||| || |||||||||| |||| ||||| |||| ||||| ||| ||||    
T  9801067 ccttatataggcacgcattaaaaat-ggcgcattcgggttttgcggcgtgtgattagggacggttagaggacacatgtagggtgaccctcgcacgtgggc 9800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 21342359 - 21342298
Alignment:
Q  18 caacgctcaagtctgttatggaactgagaaagagtg--tagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||| || |||||||||| ||||||||  ||||||||||||||||||||||||    
T  21342359 caacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaat 21342298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 1770834 - 1770903
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtga 75  Q
    ||||| ||||| ||||||||||  || ||||||||||| ||||||||  |||||||||||||||||||||    
T  1770834 gttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 12516194 - 12516263
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||| ||||||||||  || ||||||||||||||||  |||||  ||||||||||||||||||    
T  12516194 gttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 431398 - 431327
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagt--gtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| | |||||||||||  | ||||||||||||||||||  || ||||||| ||||||||||||||    
T  431398 gttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtgaaaagtgaat 431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 16704419 - 16704482
Alignment:
Q  16 tccaacgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| ||||| || |||||  ||||||||||  ||||||||||||||||||||||||||    
T  16704419 tccaacgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaat 16704482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 28723848 - 28723785
Alignment:
Q  16 tccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||||  | |||||||| |||||||||||  ||||| |||||||||||||||||    
T  28723848 tccaacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaat 28723785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 12731643 - 12731574
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtaga--aagtgttgtgaaaagtga 75  Q
    ||||| ||||| ||||||| |||  | ||||||||||||||||||||| |  ||||||||||||||||||    
T  12731643 gttagtactccgacgctcacgtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtga 12731574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 13085152 - 13085084
Alignment:
Q  11 agcactccaacgctcaagtctgttatggaactgagaaagagt--gtagaaagtgttgtgaaaagtgaat 77  Q
    |||| |||||||||||||||  | ||| |||||||||||| |  ||||||||| |||||||||||||||    
T  13085152 agcattccaacgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaagtgaat 13085084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 28715543 - 28715499
Alignment:
Q  35 atggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||  | |||||||||||||||||||||    
T  28715543 atggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaat 28715499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2311916 - 2311845
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    |||||||||||||||||||| || |  | |||  |||||||||  |||||||||||||||||||| ||||||    
T  2311916 gttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtgaaaggtgaat 2311845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 5671779 - 5671850
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||  || ||||||||||||||||  |||||||||||||||||||||||||||    
T  5671779 gttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 5671850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 33101589 - 33101519
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgag--aaagagtgtagaaagtgttgtgaaaagtgaa 76  Q
    ||||||||||||||||||||||| || |||||||||||  |||| ||||||||||||||||||||||||||    
T  33101589 gttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaa 33101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 12177395 - 12177466
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| || |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||    
T  12177395 gttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12177466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 34273096 - 34273284
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    ||||||||||||| ||||||||| || | ||||||||||||||  ||||||||||||||||| ||||||| | ||      ||||||||  ||||||| |    
T  34273096 gttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgagggtgaa-gcaatgtcgc 34273194  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcctcg 190  Q
    ||||||| |||    | |||||||||||||||| |  ||||||||||||| | || ||||||||||||| |||  |||||| |||||||||    
T  34273195 ccttatataggtgtgc-ttgggaataaccgcctccaggttttgcggcgtgcggttaggaacggttagaggacatgtgtagcatgatcctcg 34273284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 16050403 - 16050473
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaa 76  Q
    |||||||||||||||||||||||  | ||||||||||||||||  ||||||||||||| ||||||||||||    
T  16050403 gttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaa 16050473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 26977749 - 26977820
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||||||| ||||||||  ||||||||||| ||||||||| |||||    
T  26977749 gttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaat 26977820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 23280342 - 23280270
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaataat 80  Q
    |||| ||||| ||| |||||||| || ||||||||||||||| ||||  | ||||||||||||||||||||||    
T  23280342 gttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgtatagtgttgtgaaaagtgaataat 23280270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 22414784 - 22414855
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||  ||||||||||| || ||| |||||| ||| |||||  |||||||||||||||||||||||    
T  22414784 gttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaat 22414855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 52565589 - 52565660
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||  ||||||||||| || | |||||||| ||||||||   |||||||||||||||||||||||    
T  52565589 gttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaat 52565660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 1659871 - 1659802
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    |||| ||||||||||||||||||  | ||||| ||||||||||  |||||  ||||||||||||||||||    
T  1659871 gttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtga 1659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 16030418 - 16030475
Alignment:
Q  22 gctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| || ||||||||||  ||||||||  |||||||||||||||||||||||    
T  16030418 gctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtgaat 16030475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 14255110 - 14255066
Alignment:
Q  10 tagcactccaacgctcaagtctgttatggaactgagaaagagtgt 54  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||    
T  14255110 tagcactccaacgctcaagtcattaatgaaactgagaaagagtgt 14255066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 29358 - 29289
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||||||||||||||| || ||| || | || |||||||||||||||||||||||||||||||    
T  29358 gttagcactccaacgctcaagtcagtaatgaaaataaggaagagtgtagaaagtgttgtgaaaagtgaat 29289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 7894 - 8081
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaataat------agggtgaacacaatgtcac 99  Q
    |||||||||| ||||||||| || || ||| || |||||||||||||  ||||||||||||||||||||||| ||      || ||||| ||||||||||    
T  7894 gttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataatttgagtgtgaa-acaatgtcac 7992  T
Q  100 ccttatagaggcacacgttgggaataaccgccttcgagttttgcggcgtgtgatttggaacggttagagaacacttgtagcgtgatcct 188  Q
    | ||||| ||   | | |||||||||| ||| | || ||||||| || ||| ||| | ||||||||||| |||| ||||||||||||||    
T  7993 cattatatagagccgcattgggaataatcgcatccgggttttgcagcatgtcattagcaacggttagaggacacgtgtagcgtgatcct 8081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 15512 - 15441
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagag--tgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||||||||| |||||| |||| || |||||||||||||||||  | ||||||||||||||||||||||||    
T  15512 gttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaat 15441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 8659 - 8588
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtgaat 77  Q
    ||||||||| | ||||||||||| || ||| |||||| ||| |||||  |||||||||||||||||||||||    
T  8659 gttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaat 8588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 325 - 256
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||| ||||||||||| || ||||||||||||||||  |||||  ||||||||||||||||||    
T  325 gttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 40805 - 40874
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactg--agaaagagtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||||||||||||||| || |||||||||  ||| ||||||||| ||||||| ||||||||||    
T  40805 gttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtga 40874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13931 - 14002
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaaga--gtgtagaaagtgttgtgaaaagtgaat 77  Q
    ||||| ||||||| ||||||||| || ||| ||||||||||||  |||||||||||||||||| ||||||||    
T  13931 gttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaat 14002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 11525 - 11591
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||||||||||||  ||  | |||||||||||||||||||||  ||||||||||||||||||    
T  11525 gttagcactccaacgctcacctcattaatggaactgagaaagagtgta-taagtgttgtgaaaagtga 11591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 6307 - 6376
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtga 75  Q
    ||||||||| | | ||||||||| || |||||||||||||| |||||  |||||||||||||||||||||    
T  6307 gttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 10997 - 10928
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactg--agaaagagtgtagaaagtgttgtgaaaagtga 75  Q
    |||||||||||||||||||||||  | |||||||||  ||| || |||||  ||||||||||||||||||    
T  10997 gttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 22895 - 22964
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaa--gagtgtagaaagtgttgtgaaaagtga 75  Q
    ||||||||||  ||||||||||| || ||||||||||||||  | |||||  ||||||||||||||||||    
T  22895 gttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtga 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 10800 - 10756
Alignment:
Q  8 gttagcactccaacgctcaagtctgttatggaactgagaaagagt 52  Q
    ||||||||||| ||| ||||||| || ||||||||||||||||||    
T  10800 gttagcactccgacgttcaagtcagtaatggaactgagaaagagt 10756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 121075 - 121024
Alignment:
Q  26 aagtctgttatggaactgagaaagagtgt--agaaagtgttgtgaaaagtga 75  Q
    ||||| || ||||||||||||||||||||  | |||||||||||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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